Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00475 and PS417_00480 are separated by 103 nucleotides PS417_00480 and PS417_00485 overlap by 4 nucleotides PS417_00485 and PS417_00490 are separated by 1 nucleotides PS417_00490 and PS417_00495 overlap by 4 nucleotides
PS417_00475: PS417_00475 - membrane protein, at 94,106 to 95,335
_00475
PS417_00480: PS417_00480 - hypothetical protein, at 95,439 to 96,050
_00480
PS417_00485: PS417_00485 - ABC transporter permease, at 96,047 to 96,985
_00485
PS417_00490: PS417_00490 - iron ABC transporter ATP-binding protein, at 96,987 to 97,790
_00490
PS417_00495: PS417_00495 - ABC transporter permease, at 97,787 to 98,935
_00495
Position (kb) 96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 95.207 kb on + strand, within PS417_00475 at 95.207 kb on + strand, within PS417_00475 at 95.207 kb on + strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.223 kb on - strand at 95.318 kb on + strand at 95.319 kb on - strand at 95.374 kb on + strand at 95.375 kb on - strand at 95.375 kb on - strand at 95.698 kb on + strand, within PS417_00480 at 95.699 kb on - strand, within PS417_00480 at 95.717 kb on + strand, within PS417_00480 at 95.768 kb on + strand, within PS417_00480 at 95.821 kb on + strand, within PS417_00480 at 96.018 kb on + strand at 96.019 kb on - strand at 96.030 kb on + strand at 96.763 kb on + strand, within PS417_00485 at 96.867 kb on + strand, within PS417_00485 at 96.990 kb on + strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.999 kb on + strand at 97.150 kb on + strand, within PS417_00490 at 97.151 kb on - strand, within PS417_00490 at 97.354 kb on + strand, within PS417_00490 at 97.355 kb on - strand, within PS417_00490 at 97.623 kb on - strand, within PS417_00490 at 97.684 kb on + strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.779 kb on + strand at 97.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 95,207 + PS417_00475 0.90 -1.0 95,207 + PS417_00475 0.90 -1.4 95,207 + PS417_00475 0.90 -0.2 95,208 - PS417_00475 0.90 -1.3 95,208 - PS417_00475 0.90 -0.4 95,208 - PS417_00475 0.90 -1.2 95,223 - -0.8 95,318 + -2.8 95,319 - -0.5 95,374 + -0.4 95,375 - +0.5 95,375 - -0.7 95,698 + PS417_00480 0.42 +0.2 95,699 - PS417_00480 0.42 +0.2 95,717 + PS417_00480 0.45 +0.3 95,768 + PS417_00480 0.54 +0.1 95,821 + PS417_00480 0.62 -0.9 96,018 + -0.4 96,019 - +0.7 96,030 + +0.2 96,763 + PS417_00485 0.76 -0.7 96,867 + PS417_00485 0.87 -1.2 96,990 + +0.9 96,991 - +0.3 96,991 - -1.0 96,991 - -0.2 96,999 + +0.3 97,150 + PS417_00490 0.20 +0.1 97,151 - PS417_00490 0.20 -0.1 97,354 + PS417_00490 0.46 -0.7 97,355 - PS417_00490 0.46 -0.1 97,623 - PS417_00490 0.79 -0.9 97,684 + PS417_00490 0.87 -0.2 97,685 - PS417_00490 0.87 +1.2 97,685 - PS417_00490 0.87 +0.1 97,685 - PS417_00490 0.87 +0.4 97,685 - PS417_00490 0.87 +0.6 97,779 + +0.9 97,780 - +0.6
Or see this region's nucleotide sequence