Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04490 and PS417_04495 are separated by 133 nucleotides PS417_04495 and PS417_04500 are separated by 11 nucleotides PS417_04500 and PS417_04505 are separated by 36 nucleotides
PS417_04490: PS417_04490 - glycerol acyltransferase, at 992,799 to 993,962
_04490
PS417_04495: PS417_04495 - LITAF-like zinc ribbon domain containing protein, at 994,096 to 994,278
_04495
PS417_04500: PS417_04500 - hypothetical protein, at 994,290 to 994,550
_04500
PS417_04505: PS417_04505 - hypothetical protein, at 994,587 to 995,207
_04505
Position (kb)
994
995 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 993.977 kb on - strand at 993.977 kb on - strand at 993.992 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.024 kb on - strand at 994.024 kb on - strand at 994.042 kb on - strand at 994.042 kb on - strand at 994.052 kb on - strand at 994.056 kb on - strand at 994.056 kb on - strand at 994.070 kb on - strand at 994.070 kb on - strand at 994.070 kb on - strand at 994.115 kb on - strand, within PS417_04495 at 994.115 kb on - strand, within PS417_04495 at 994.115 kb on - strand, within PS417_04495 at 994.115 kb on - strand, within PS417_04495 at 994.127 kb on - strand, within PS417_04495 at 994.180 kb on + strand, within PS417_04495 at 994.180 kb on + strand, within PS417_04495 at 994.180 kb on + strand, within PS417_04495 at 994.180 kb on + strand, within PS417_04495 at 994.180 kb on + strand, within PS417_04495 at 994.181 kb on - strand, within PS417_04495 at 994.181 kb on - strand, within PS417_04495 at 994.181 kb on - strand, within PS417_04495 at 994.181 kb on - strand, within PS417_04495 at 994.181 kb on - strand, within PS417_04495 at 994.181 kb on - strand, within PS417_04495 at 994.181 kb on - strand, within PS417_04495 at 994.182 kb on + strand, within PS417_04495 at 994.183 kb on - strand, within PS417_04495 at 994.183 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.185 kb on - strand, within PS417_04495 at 994.284 kb on - strand at 994.284 kb on - strand at 994.284 kb on - strand at 994.303 kb on - strand at 994.485 kb on + strand, within PS417_04500 at 994.485 kb on + strand, within PS417_04500 at 994.548 kb on + strand at 994.549 kb on - strand at 995.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 993,977 - -0.6 993,977 - +2.2 993,992 - +0.4 994,005 - -1.4 994,005 - -0.2 994,024 - -1.1 994,024 - -1.7 994,042 - -1.9 994,042 - -2.1 994,052 - -0.5 994,056 - -1.7 994,056 - -1.9 994,070 - -1.6 994,070 - +0.3 994,070 - -2.4 994,115 - PS417_04495 0.10 -3.8 994,115 - PS417_04495 0.10 -1.9 994,115 - PS417_04495 0.10 -2.3 994,115 - PS417_04495 0.10 -2.8 994,127 - PS417_04495 0.17 -1.4 994,180 + PS417_04495 0.46 +1.4 994,180 + PS417_04495 0.46 +2.3 994,180 + PS417_04495 0.46 +1.7 994,180 + PS417_04495 0.46 +1.0 994,180 + PS417_04495 0.46 +2.2 994,181 - PS417_04495 0.46 -2.3 994,181 - PS417_04495 0.46 -3.1 994,181 - PS417_04495 0.46 -4.5 994,181 - PS417_04495 0.46 -2.3 994,181 - PS417_04495 0.46 -0.4 994,181 - PS417_04495 0.46 -2.8 994,181 - PS417_04495 0.46 -1.2 994,182 + PS417_04495 0.47 +2.4 994,183 - PS417_04495 0.48 -1.4 994,183 - PS417_04495 0.48 -2.1 994,185 - PS417_04495 0.49 -2.7 994,185 - PS417_04495 0.49 -2.0 994,185 - PS417_04495 0.49 -2.2 994,185 - PS417_04495 0.49 -1.6 994,185 - PS417_04495 0.49 +0.3 994,185 - PS417_04495 0.49 -3.1 994,185 - PS417_04495 0.49 -2.9 994,185 - PS417_04495 0.49 -2.1 994,185 - PS417_04495 0.49 -1.2 994,185 - PS417_04495 0.49 -2.2 994,284 - -1.9 994,284 - -1.6 994,284 - -1.4 994,303 - -2.2 994,485 + PS417_04500 0.75 +0.8 994,485 + PS417_04500 0.75 +1.0 994,548 + +0.7 994,549 - -0.9 995,272 + +0.4
Or see this region's nucleotide sequence