Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04255 and PS417_04260 overlap by 1 nucleotides PS417_04260 and PS417_04265 are separated by 51 nucleotides PS417_04265 and PS417_04270 are separated by 70 nucleotides
PS417_04255: PS417_04255 - rod shape-determining protein MreC, at 953,048 to 954,118
_04255
PS417_04260: PS417_04260 - rod shape-determining protein MreD, at 954,118 to 954,606
_04260
PS417_04265: PS417_04265 - septum formation protein Maf, at 954,658 to 955,254
_04265
PS417_04270: PS417_04270 - ribonuclease G, at 955,325 to 956,782
_04270
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 953.839 kb on + strand, within PS417_04255 at 954.116 kb on + strand at 954.521 kb on + strand, within PS417_04260 at 954.642 kb on - strand at 954.766 kb on - strand, within PS417_04265 at 954.899 kb on + strand, within PS417_04265 at 955.034 kb on + strand, within PS417_04265 at 955.072 kb on + strand, within PS417_04265 at 955.073 kb on - strand, within PS417_04265 at 955.117 kb on - strand, within PS417_04265 at 955.117 kb on - strand, within PS417_04265 at 955.136 kb on + strand, within PS417_04265 at 955.136 kb on + strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.279 kb on + strand at 955.280 kb on - strand at 955.448 kb on + strand at 955.448 kb on + strand at 955.448 kb on + strand at 955.449 kb on - strand at 955.449 kb on - strand at 955.449 kb on - strand at 955.691 kb on + strand, within PS417_04270 at 955.691 kb on + strand, within PS417_04270 at 955.691 kb on + strand, within PS417_04270 at 955.692 kb on - strand, within PS417_04270 at 955.717 kb on + strand, within PS417_04270 at 955.940 kb on + strand at 955.966 kb on + strand, within PS417_04270 at 956.120 kb on + strand, within PS417_04270
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 953,839 + PS417_04255 0.74 +0.6 954,116 + +1.0 954,521 + PS417_04260 0.82 -0.9 954,642 - +2.0 954,766 - PS417_04265 0.18 +1.7 954,899 + PS417_04265 0.40 -1.6 955,034 + PS417_04265 0.63 -1.5 955,072 + PS417_04265 0.69 -0.3 955,073 - PS417_04265 0.70 +0.3 955,117 - PS417_04265 0.77 +3.4 955,117 - PS417_04265 0.77 +0.3 955,136 + PS417_04265 0.80 +0.4 955,136 + PS417_04265 0.80 +0.6 955,137 - PS417_04265 0.80 +1.2 955,137 - PS417_04265 0.80 -0.3 955,137 - PS417_04265 0.80 +0.1 955,137 - PS417_04265 0.80 +1.1 955,279 + -0.5 955,280 - +1.3 955,448 + -0.2 955,448 + -1.2 955,448 + -0.7 955,449 - -1.2 955,449 - -0.4 955,449 - -2.8 955,691 + PS417_04270 0.25 -2.1 955,691 + PS417_04270 0.25 -0.9 955,691 + PS417_04270 0.25 +1.0 955,692 - PS417_04270 0.25 +0.4 955,717 + PS417_04270 0.27 -0.5 955,940 + +1.4 955,966 + PS417_04270 0.44 -0.6 956,120 + PS417_04270 0.55 -2.6
Or see this region's nucleotide sequence