Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04165 and PS417_04170 are separated by 145 nucleotides PS417_04170 and PS417_04175 are separated by 17 nucleotides PS417_04175 and PS417_04180 are separated by 158 nucleotides PS417_04180 and PS417_04185 are separated by 10 nucleotides
PS417_04165: PS417_04165 - cytochrome C, at 935,211 to 935,990
_04165
PS417_04170: PS417_04170 - stringent starvation protein A, at 936,136 to 936,753
_04170
PS417_04175: PS417_04175 - peptidase, at 936,771 to 937,190
_04175
PS417_04180: PS417_04180 - GntR family transcriptional regulator, at 937,349 to 938,098
_04180
PS417_04185: PS417_04185 - hypothetical protein, at 938,109 to 938,294
_04185
Position (kb) 936
937
938 Strain fitness (log2 ratio) -2
-1
0
1 at 935.999 kb on + strand at 936.013 kb on + strand at 936.067 kb on + strand at 936.185 kb on - strand at 936.506 kb on + strand, within PS417_04170 at 936.506 kb on + strand, within PS417_04170 at 936.507 kb on - strand, within PS417_04170 at 936.507 kb on - strand, within PS417_04170 at 936.683 kb on - strand, within PS417_04170 at 936.683 kb on - strand, within PS417_04170 at 936.758 kb on + strand at 936.789 kb on + strand at 937.035 kb on + strand, within PS417_04175 at 937.035 kb on + strand, within PS417_04175 at 937.035 kb on + strand, within PS417_04175 at 937.035 kb on + strand, within PS417_04175 at 937.036 kb on - strand, within PS417_04175 at 937.036 kb on - strand, within PS417_04175 at 937.294 kb on - strand at 937.309 kb on + strand at 937.310 kb on - strand at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 938.155 kb on + strand, within PS417_04185 at 938.185 kb on - strand, within PS417_04185
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 935,999 + +0.6 936,013 + +0.5 936,067 + -0.2 936,185 - -1.5 936,506 + PS417_04170 0.60 -1.1 936,506 + PS417_04170 0.60 -1.0 936,507 - PS417_04170 0.60 -1.8 936,507 - PS417_04170 0.60 -1.1 936,683 - PS417_04170 0.89 -0.4 936,683 - PS417_04170 0.89 -1.5 936,758 + -0.1 936,789 + -0.2 937,035 + PS417_04175 0.63 +1.2 937,035 + PS417_04175 0.63 -0.4 937,035 + PS417_04175 0.63 +1.1 937,035 + PS417_04175 0.63 -2.5 937,036 - PS417_04175 0.63 +0.6 937,036 - PS417_04175 0.63 -0.3 937,294 - +0.3 937,309 + -0.6 937,310 - +1.6 937,944 - PS417_04180 0.79 -1.6 937,944 - PS417_04180 0.79 -0.4 937,944 - PS417_04180 0.79 +1.0 937,944 - PS417_04180 0.79 +0.8 938,155 + PS417_04185 0.25 -1.4 938,185 - PS417_04185 0.41 +1.6
Or see this region's nucleotide sequence