Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04120 and PS417_04125 are separated by 79 nucleotides PS417_04125 and PS417_04130 are separated by 148 nucleotides
PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303
_04120
PS417_04125: PS417_04125 - ATPase, at 927,383 to 928,477
_04125
PS417_04130: PS417_04130 - AraC family transcriptional regulator, at 928,626 to 929,621
_04130
Position (kb) 927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.479 kb on + strand at 927.550 kb on + strand, within PS417_04125 at 927.890 kb on + strand, within PS417_04125 at 928.380 kb on - strand at 928.537 kb on - strand at 928.537 kb on - strand at 928.540 kb on + strand at 928.540 kb on + strand at 928.540 kb on + strand at 928.541 kb on - strand at 928.717 kb on + strand at 928.730 kb on - strand, within PS417_04130 at 928.730 kb on - strand, within PS417_04130 at 928.730 kb on - strand, within PS417_04130 at 928.805 kb on - strand, within PS417_04130 at 928.959 kb on + strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.996 kb on + strand, within PS417_04130 at 929.075 kb on - strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.081 kb on - strand, within PS417_04130 at 929.117 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.203 kb on + strand, within PS417_04130 at 929.204 kb on - strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 927,479 + -1.4 927,550 + PS417_04125 0.15 +0.4 927,890 + PS417_04125 0.46 +0.8 928,380 - +1.3 928,537 - +0.2 928,537 - -1.0 928,540 + +0.5 928,540 + -1.0 928,540 + -0.2 928,541 - -0.4 928,717 + +0.2 928,730 - PS417_04130 0.10 +1.4 928,730 - PS417_04130 0.10 -0.3 928,730 - PS417_04130 0.10 +0.3 928,805 - PS417_04130 0.18 -2.3 928,959 + PS417_04130 0.33 +0.1 928,960 - PS417_04130 0.34 +0.0 928,960 - PS417_04130 0.34 -1.7 928,996 + PS417_04130 0.37 -0.2 929,075 - PS417_04130 0.45 +0.8 929,078 + PS417_04130 0.45 -0.5 929,078 + PS417_04130 0.45 -0.6 929,078 + PS417_04130 0.45 -0.6 929,079 - PS417_04130 0.45 +0.6 929,079 - PS417_04130 0.45 +0.1 929,079 - PS417_04130 0.45 +0.8 929,080 + PS417_04130 0.46 +0.1 929,080 + PS417_04130 0.46 -0.6 929,080 + PS417_04130 0.46 +0.3 929,081 - PS417_04130 0.46 -0.9 929,117 - PS417_04130 0.49 +2.6 929,161 - PS417_04130 0.54 +1.0 929,161 - PS417_04130 0.54 +1.1 929,203 + PS417_04130 0.58 -1.9 929,204 - PS417_04130 0.58 -1.2 929,304 + PS417_04130 0.68 -0.5 929,304 + PS417_04130 0.68 -0.5 929,305 - PS417_04130 0.68 -0.1 929,305 - PS417_04130 0.68 +1.6
Or see this region's nucleotide sequence