Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04095 and PS417_04100 overlap by 8 nucleotides PS417_04100 and PS417_04105 are separated by 111 nucleotides PS417_04105 and PS417_04110 are separated by 188 nucleotides PS417_04110 and PS417_04115 are separated by 141 nucleotides
PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131
_04095
PS417_04100: PS417_04100 - chemotaxis protein CheY, at 922,124 to 922,684
_04100
PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520
_04105
PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146
_04110
PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923
_04115
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 922.749 kb on - strand at 922.749 kb on - strand at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105 at 923.147 kb on + strand, within PS417_04105 at 923.148 kb on - strand, within PS417_04105 at 923.177 kb on + strand, within PS417_04105 at 923.178 kb on - strand, within PS417_04105 at 923.202 kb on - strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.243 kb on - strand, within PS417_04105 at 923.274 kb on + strand, within PS417_04105 at 923.275 kb on - strand at 923.275 kb on - strand, within PS417_04105 at 923.275 kb on - strand, within PS417_04105 at 923.362 kb on + strand, within PS417_04105 at 923.362 kb on + strand, within PS417_04105 at 923.363 kb on - strand at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.525 kb on - strand, within PS417_04105 at 923.535 kb on - strand, within PS417_04105 at 923.594 kb on - strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.697 kb on - strand, within PS417_04105 at 923.886 kb on + strand, within PS417_04105 at 923.969 kb on - strand, within PS417_04105 at 923.999 kb on + strand, within PS417_04105 at 924.194 kb on + strand, within PS417_04105 at 924.195 kb on - strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.390 kb on - strand at 924.561 kb on + strand at 924.568 kb on + strand at 924.568 kb on + strand at 924.569 kb on - strand at 924.710 kb on + strand at 924.726 kb on - strand at 925.203 kb on - strand at 925.203 kb on - strand at 925.245 kb on - strand at 925.426 kb on - strand, within PS417_04115 at 925.426 kb on - strand, within PS417_04115 at 925.433 kb on + strand, within PS417_04115 at 925.474 kb on - strand, within PS417_04115
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 922,749 - -1.7 922,749 - -2.2 922,982 + PS417_04105 0.11 +0.2 922,982 + PS417_04105 0.11 -0.6 922,982 + PS417_04105 0.11 -0.0 922,983 - PS417_04105 0.11 -0.4 922,983 - PS417_04105 0.11 +1.4 922,983 - PS417_04105 0.11 +0.8 923,096 + PS417_04105 0.17 -0.1 923,096 + PS417_04105 0.17 +0.2 923,147 + PS417_04105 0.20 +0.7 923,148 - PS417_04105 0.20 -0.7 923,177 + PS417_04105 0.22 -2.8 923,178 - PS417_04105 0.22 +0.0 923,202 - PS417_04105 0.24 -0.1 923,242 + PS417_04105 0.26 -0.0 923,242 + PS417_04105 0.26 -0.6 923,242 + PS417_04105 0.26 -0.2 923,243 - PS417_04105 0.26 -1.2 923,274 + PS417_04105 0.28 -0.1 923,275 - +1.4 923,275 - PS417_04105 0.28 +0.2 923,275 - PS417_04105 0.28 -0.2 923,362 + PS417_04105 0.33 -0.2 923,362 + PS417_04105 0.33 -0.2 923,363 - +0.8 923,373 - PS417_04105 0.33 -0.2 923,373 - PS417_04105 0.33 +0.4 923,373 - PS417_04105 0.33 -0.6 923,373 - PS417_04105 0.33 +1.8 923,525 - PS417_04105 0.42 -0.2 923,535 - PS417_04105 0.43 -0.3 923,594 - PS417_04105 0.46 -0.0 923,597 + PS417_04105 0.46 +0.4 923,597 + PS417_04105 0.46 +1.1 923,597 + PS417_04105 0.46 -0.2 923,598 - PS417_04105 0.46 +3.0 923,598 - PS417_04105 0.46 -1.6 923,598 - PS417_04105 0.46 -2.5 923,598 - PS417_04105 0.46 -0.3 923,697 - PS417_04105 0.52 +0.4 923,886 + PS417_04105 0.63 -0.3 923,969 - PS417_04105 0.68 -0.3 923,999 + PS417_04105 0.70 -1.0 924,194 + PS417_04105 0.81 +1.4 924,195 - PS417_04105 0.81 +1.4 924,338 + PS417_04105 0.89 +0.6 924,338 + PS417_04105 0.89 -0.6 924,338 + PS417_04105 0.89 +0.6 924,339 - PS417_04105 0.89 -0.4 924,339 - PS417_04105 0.89 +0.4 924,339 - PS417_04105 0.89 -0.5 924,339 - PS417_04105 0.89 -0.4 924,339 - PS417_04105 0.89 -0.2 924,339 - PS417_04105 0.89 -0.5 924,339 - PS417_04105 0.89 +1.3 924,339 - PS417_04105 0.89 -0.5 924,390 - +0.7 924,561 + +0.2 924,568 + +0.6 924,568 + -0.2 924,569 - +0.8 924,710 + +1.8 924,726 - -0.8 925,203 - -0.3 925,203 - -3.0 925,245 - -2.5 925,426 - PS417_04115 0.22 +0.3 925,426 - PS417_04115 0.22 -1.0 925,433 + PS417_04115 0.23 -1.5 925,474 - PS417_04115 0.29 +0.3
Or see this region's nucleotide sequence