Strain Fitness in Pseudomonas simiae WCS417 around PS417_03545

Experiment: Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03535 and PS417_03540 are separated by 2 nucleotidesPS417_03540 and PS417_03545 overlap by 8 nucleotidesPS417_03545 and PS417_03550 are separated by 6 nucleotidesPS417_03550 and PS417_03555 are separated by 473 nucleotides PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115 _03535 PS417_03540: PS417_03540 - type III secretion protein, at 808,118 to 808,675 _03540 PS417_03545: PS417_03545 - type III secretion protein, at 808,668 to 809,489 _03545 PS417_03550: PS417_03550 - hypothetical protein, at 809,496 to 809,858 _03550 PS417_03555: PS417_03555 - ATPase AAA, at 810,332 to 811,258 _03555 Position (kb) 808 809 810Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 807.734 kb on + strand, within PS417_03535at 807.735 kb on - strand, within PS417_03535at 807.779 kb on + strand, within PS417_03535at 807.779 kb on + strand, within PS417_03535at 807.780 kb on - strand, within PS417_03535at 807.782 kb on + strand, within PS417_03535at 807.810 kb on + strand, within PS417_03535at 807.811 kb on - strand, within PS417_03535at 807.822 kb on - strand, within PS417_03535at 807.921 kb on + strand, within PS417_03535at 807.975 kb on + strand, within PS417_03535at 807.975 kb on + strandat 807.975 kb on + strand, within PS417_03535at 807.976 kb on - strand, within PS417_03535at 807.978 kb on + strand, within PS417_03535at 807.979 kb on - strand, within PS417_03535at 808.031 kb on - strand, within PS417_03535at 808.119 kb on + strandat 808.174 kb on + strand, within PS417_03540at 808.248 kb on - strand, within PS417_03540at 808.256 kb on + strand, within PS417_03540at 808.256 kb on + strand, within PS417_03540at 808.384 kb on + strand, within PS417_03540at 808.385 kb on - strand, within PS417_03540at 808.385 kb on - strand, within PS417_03540at 808.499 kb on + strand, within PS417_03540at 808.500 kb on - strand, within PS417_03540at 808.524 kb on - strand, within PS417_03540at 808.583 kb on + strand, within PS417_03540at 808.583 kb on + strand, within PS417_03540at 808.584 kb on - strand, within PS417_03540at 808.584 kb on - strand, within PS417_03540at 808.584 kb on - strand, within PS417_03540at 808.585 kb on + strand, within PS417_03540at 808.586 kb on - strand, within PS417_03540at 808.586 kb on - strand, within PS417_03540at 808.586 kb on - strand, within PS417_03540at 808.596 kb on + strand, within PS417_03540at 808.596 kb on + strand, within PS417_03540at 808.596 kb on + strand, within PS417_03540at 808.629 kb on + strandat 808.629 kb on + strandat 808.629 kb on + strandat 808.630 kb on - strandat 808.630 kb on - strandat 808.631 kb on + strandat 808.632 kb on - strandat 808.669 kb on + strandat 808.669 kb on + strandat 808.772 kb on + strand, within PS417_03545at 808.773 kb on - strand, within PS417_03545at 808.773 kb on - strand, within PS417_03545at 808.773 kb on - strand, within PS417_03545at 808.870 kb on + strand, within PS417_03545at 808.894 kb on + strand, within PS417_03545at 808.895 kb on - strand, within PS417_03545at 809.018 kb on + strandat 809.164 kb on + strand, within PS417_03545at 809.164 kb on + strand, within PS417_03545at 809.164 kb on + strand, within PS417_03545at 809.164 kb on + strand, within PS417_03545at 809.164 kb on + strand, within PS417_03545at 809.165 kb on - strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.169 kb on - strand, within PS417_03545at 809.170 kb on + strand, within PS417_03545at 809.171 kb on - strand, within PS417_03545at 809.234 kb on + strand, within PS417_03545at 809.339 kb on + strand, within PS417_03545at 809.374 kb on - strand, within PS417_03545at 809.376 kb on + strand, within PS417_03545at 809.401 kb on - strand, within PS417_03545at 809.401 kb on - strand, within PS417_03545at 809.429 kb on + strandat 809.457 kb on + strandat 809.457 kb on + strandat 809.457 kb on + strandat 809.458 kb on - strandat 809.458 kb on - strandat 809.458 kb on - strandat 809.655 kb on - strand, within PS417_03550at 809.673 kb on + strand, within PS417_03550at 809.717 kb on + strand, within PS417_03550at 809.718 kb on - strand, within PS417_03550at 809.828 kb on + strandat 809.829 kb on - strandat 810.029 kb on + strandat 810.168 kb on - strandat 810.168 kb on - strandat 810.187 kb on - strandat 810.192 kb on + strandat 810.294 kb on + strandat 810.294 kb on + strandat 810.295 kb on - strandat 810.295 kb on - strandat 810.311 kb on - strandat 810.424 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml
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807,734 + PS417_03535 0.38 +0.5
807,735 - PS417_03535 0.38 -1.7
807,779 + PS417_03535 0.45 +0.7
807,779 + PS417_03535 0.45 +0.2
807,780 - PS417_03535 0.45 -1.5
807,782 + PS417_03535 0.45 -0.2
807,810 + PS417_03535 0.50 -0.5
807,811 - PS417_03535 0.50 -0.0
807,822 - PS417_03535 0.52 +0.7
807,921 + PS417_03535 0.68 -2.0
807,975 + PS417_03535 0.77 +0.3
807,975 + +0.5
807,975 + PS417_03535 0.77 +2.5
807,976 - PS417_03535 0.77 +0.3
807,978 + PS417_03535 0.77 +0.0
807,979 - PS417_03535 0.78 -0.5
808,031 - PS417_03535 0.86 -0.7
808,119 + +0.5
808,174 + PS417_03540 0.10 -0.3
808,248 - PS417_03540 0.23 +1.5
808,256 + PS417_03540 0.25 +0.1
808,256 + PS417_03540 0.25 -0.2
808,384 + PS417_03540 0.48 -0.5
808,385 - PS417_03540 0.48 +0.3
808,385 - PS417_03540 0.48 +1.2
808,499 + PS417_03540 0.68 +1.3
808,500 - PS417_03540 0.68 -0.1
808,524 - PS417_03540 0.73 +0.2
808,583 + PS417_03540 0.83 -0.1
808,583 + PS417_03540 0.83 -2.3
808,584 - PS417_03540 0.84 -0.7
808,584 - PS417_03540 0.84 -2.1
808,584 - PS417_03540 0.84 -0.3
808,585 + PS417_03540 0.84 -1.5
808,586 - PS417_03540 0.84 +0.4
808,586 - PS417_03540 0.84 -1.4
808,586 - PS417_03540 0.84 +0.1
808,596 + PS417_03540 0.86 -1.6
808,596 + PS417_03540 0.86 -0.1
808,596 + PS417_03540 0.86 +0.1
808,629 + -0.8
808,629 + -1.7
808,629 + -0.3
808,630 - -1.1
808,630 - +0.1
808,631 + -0.8
808,632 - -0.3
808,669 + +3.9
808,669 + +0.9
808,772 + PS417_03545 0.13 -0.1
808,773 - PS417_03545 0.13 -0.1
808,773 - PS417_03545 0.13 +0.7
808,773 - PS417_03545 0.13 -0.8
808,870 + PS417_03545 0.25 -1.7
808,894 + PS417_03545 0.27 +0.3
808,895 - PS417_03545 0.28 -0.6
809,018 + -0.8
809,164 + PS417_03545 0.60 -0.3
809,164 + PS417_03545 0.60 +0.2
809,164 + PS417_03545 0.60 -1.9
809,164 + PS417_03545 0.60 -0.4
809,164 + PS417_03545 0.60 -0.1
809,165 - PS417_03545 0.60 +0.7
809,168 + PS417_03545 0.61 -1.2
809,168 + PS417_03545 0.61 -1.2
809,168 + PS417_03545 0.61 +0.4
809,168 + PS417_03545 0.61 -0.1
809,168 + PS417_03545 0.61 -1.5
809,169 - PS417_03545 0.61 -1.5
809,170 + PS417_03545 0.61 -1.1
809,171 - PS417_03545 0.61 -1.2
809,234 + PS417_03545 0.69 -0.3
809,339 + PS417_03545 0.82 -0.3
809,374 - PS417_03545 0.86 +1.0
809,376 + PS417_03545 0.86 +0.3
809,401 - PS417_03545 0.89 -1.3
809,401 - PS417_03545 0.89 +0.4
809,429 + +0.3
809,457 + -0.2
809,457 + -0.5
809,457 + -1.3
809,458 - +0.2
809,458 - +0.2
809,458 - -0.1
809,655 - PS417_03550 0.44 +0.5
809,673 + PS417_03550 0.49 +0.5
809,717 + PS417_03550 0.61 +0.5
809,718 - PS417_03550 0.61 -0.1
809,828 + -1.4
809,829 - -0.6
810,029 + -1.1
810,168 - +0.5
810,168 - -0.1
810,187 - +1.5
810,192 + -0.3
810,294 + +1.5
810,294 + -1.1
810,295 - +0.6
810,295 - +0.8
810,311 - +0.8
810,424 + +0.1

Or see this region's nucleotide sequence