Strain Fitness in Pseudomonas simiae WCS417 around PS417_02945

Experiment: Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02940 and PS417_02945 are separated by 82 nucleotidesPS417_02945 and PS417_02950 overlap by 4 nucleotides PS417_02940: PS417_02940 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 672,256 to 673,863 _02940 PS417_02945: PS417_02945 - Fis family transcriptional regulator, at 673,946 to 674,266 _02945 PS417_02950: PS417_02950 - tRNA-dihydrouridine synthase B, at 674,263 to 675,276 _02950 Position (kb) 673 674 675Strain fitness (log2 ratio) -1 0 1 2at 674.441 kb on - strand, within PS417_02950at 674.441 kb on - strand, within PS417_02950at 674.460 kb on - strand, within PS417_02950at 675.161 kb on - strand, within PS417_02950at 675.185 kb on - strandat 675.245 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml
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674,441 - PS417_02950 0.18 +1.2
674,441 - PS417_02950 0.18 +2.3
674,460 - PS417_02950 0.19 +1.2
675,161 - PS417_02950 0.89 +0.3
675,185 - +0.8
675,245 - +1.5
675,250 - +0.0
675,250 - +0.7
675,250 - -0.3
675,250 - +0.4
675,250 - +0.2
675,250 - -0.5
675,250 - +0.3

Or see this region's nucleotide sequence