Strain Fitness in Pseudomonas simiae WCS417 around PS417_27715

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
5,977,009	+				+1.9
5,977,099	-				-0.3
5,977,124	-				+0.5
5,977,295	+		PS417_27710	0.16	+1.4
5,977,438	+		PS417_27710	0.46	+1.6
5,977,439	-		PS417_27710	0.46	-1.2
5,977,554	+		PS417_27710	0.69	+2.6
5,977,650	+		PS417_27710	0.89	+1.0
5,977,650	+		PS417_27710	0.89	+0.8
5,977,651	-		PS417_27710	0.89	+0.4
5,977,651	-		PS417_27710	0.89	-0.4
5,977,651	-		PS417_27710	0.89	+0.2
5,977,652	+		PS417_27710	0.89	+0.0
5,977,719	-				+1.6
5,977,728	-				-1.8
5,977,728	-				-0.6
5,977,757	+				+0.0
5,977,758	-				-1.0
5,977,758	-				+1.7
5,977,758	-				-2.8
5,977,758	-				+0.2
5,977,758	-				+0.9
5,977,874	+		PS417_27715	0.42	+1.7
5,977,874	+		PS417_27715	0.42	-2.3
5,977,875	-		PS417_27715	0.42	-0.7
5,977,875	-		PS417_27715	0.42	-1.0
5,978,089	+				-2.3
5,978,103	+				-0.5
5,978,104	-				+0.5
5,978,225	+				-0.8
5,978,225	+				-0.1
5,978,226	-				-0.2
5,978,229	-				+0.1
5,978,229	-				+0.4
5,978,292	+				-1.9
5,978,292	+				+1.3
5,978,292	+				+1.4
5,978,292	+				+0.1
5,978,292	+				+2.3
5,978,292	+				+0.7
5,978,293	-				-0.4
5,978,293	-				-0.3
5,978,293	-				+0.5
5,978,293	-				-0.1
5,978,293	-				-2.1
5,978,293	-				-0.4
5,978,293	-				+0.2
5,978,293	-				+1.0
5,978,573	+		PS417_27720	0.29	-0.8
5,978,712	-		PS417_27720	0.40	-0.5
5,978,715	+		PS417_27720	0.40	+1.5
5,978,715	+		PS417_27720	0.40	+1.3
5,978,716	-		PS417_27720	0.40	+2.5
5,978,716	-		PS417_27720	0.40	-0.5
5,978,841	-		PS417_27720	0.50	+0.7
5,978,860	-		PS417_27720	0.51	+0.5
5,978,860	-		PS417_27720	0.51	+0.6
5,978,860	-		PS417_27720	0.51	-0.1
5,978,860	-		PS417_27720	0.51	+0.9
5,978,880	+		PS417_27720	0.53	-0.2
5,978,881	-		PS417_27720	0.53	-2.5
5,978,969	+		PS417_27720	0.60	+1.2
5,978,969	+		PS417_27720	0.60	+0.4
5,978,970	-		PS417_27720	0.60	-0.3
5,978,970	-		PS417_27720	0.60	+0.6
5,978,970	-		PS417_27720	0.60	-1.3
5,978,970	-		PS417_27720	0.60	+0.5
5,979,063	-		PS417_27720	0.67	-0.5