Strain Fitness in Pseudomonas simiae WCS417 around PS417_02755

Experiment: Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02745 and PS417_02750 are separated by 80 nucleotidesPS417_02750 and PS417_02755 overlap by 4 nucleotidesPS417_02755 and PS417_02760 are separated by 97 nucleotidesPS417_02760 and PS417_02765 are separated by 71 nucleotides PS417_02745: PS417_02745 - FMN-dependent NADH-azoreductase, at 625,667 to 626,308 _02745 PS417_02750: PS417_02750 - alpha/beta hydrolase, at 626,389 to 627,279 _02750 PS417_02755: PS417_02755 - membrane protein, at 627,276 to 628,145 _02755 PS417_02760: PS417_02760 - AraC family transcriptional regulator, at 628,243 to 629,031 _02760 PS417_02765: PS417_02765 - phosphate starvation-inducible protein PsiF, at 629,103 to 629,405 _02765 Position (kb) 627 628 629Strain fitness (log2 ratio) -2 -1 0 1 2 3at 626.307 kb on - strandat 626.347 kb on + strandat 626.348 kb on - strandat 626.358 kb on + strandat 626.358 kb on + strandat 626.359 kb on - strandat 626.359 kb on - strandat 626.359 kb on - strandat 626.361 kb on + strandat 626.361 kb on + strandat 626.361 kb on + strandat 626.362 kb on - strandat 626.556 kb on - strand, within PS417_02750at 626.556 kb on - strand, within PS417_02750at 626.756 kb on - strand, within PS417_02750at 626.923 kb on + strand, within PS417_02750at 626.990 kb on - strand, within PS417_02750at 627.127 kb on + strand, within PS417_02750at 627.128 kb on - strand, within PS417_02750at 627.163 kb on + strand, within PS417_02750at 627.164 kb on - strand, within PS417_02750at 627.349 kb on + strandat 627.503 kb on - strand, within PS417_02755at 627.503 kb on - strand, within PS417_02755at 627.598 kb on + strand, within PS417_02755at 627.598 kb on + strand, within PS417_02755at 627.652 kb on + strandat 627.793 kb on + strand, within PS417_02755at 627.794 kb on - strand, within PS417_02755at 627.901 kb on + strand, within PS417_02755at 627.916 kb on + strand, within PS417_02755at 627.916 kb on + strand, within PS417_02755at 627.948 kb on + strand, within PS417_02755at 627.949 kb on - strand, within PS417_02755at 627.949 kb on - strand, within PS417_02755at 627.949 kb on - strand, within PS417_02755at 627.949 kb on - strand, within PS417_02755at 628.014 kb on - strand, within PS417_02755at 628.138 kb on + strandat 628.138 kb on + strandat 628.138 kb on + strandat 628.138 kb on + strandat 628.139 kb on - strandat 628.203 kb on - strandat 628.205 kb on - strandat 628.242 kb on + strandat 628.243 kb on - strandat 628.259 kb on + strandat 628.260 kb on - strandat 628.260 kb on - strandat 628.297 kb on + strandat 628.471 kb on + strand, within PS417_02760at 628.471 kb on + strand, within PS417_02760at 628.471 kb on + strand, within PS417_02760at 628.471 kb on + strand, within PS417_02760at 628.472 kb on - strand, within PS417_02760at 628.472 kb on - strand, within PS417_02760at 628.492 kb on + strand, within PS417_02760at 628.492 kb on + strand, within PS417_02760at 628.493 kb on - strand, within PS417_02760at 629.037 kb on + strandat 629.038 kb on - strandat 629.051 kb on + strandat 629.051 kb on + strandat 629.051 kb on + strandat 629.052 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml
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626,307 - +0.0
626,347 + +1.0
626,348 - -1.2
626,358 + +0.5
626,358 + -0.1
626,359 - +1.2
626,359 - -2.0
626,359 - -0.5
626,361 + +0.5
626,361 + +2.8
626,361 + +0.5
626,362 - -0.1
626,556 - PS417_02750 0.19 -1.2
626,556 - PS417_02750 0.19 -0.1
626,756 - PS417_02750 0.41 +0.7
626,923 + PS417_02750 0.60 -0.2
626,990 - PS417_02750 0.67 +0.3
627,127 + PS417_02750 0.83 +2.3
627,128 - PS417_02750 0.83 -2.4
627,163 + PS417_02750 0.87 +1.6
627,164 - PS417_02750 0.87 -1.4
627,349 + +0.0
627,503 - PS417_02755 0.26 -1.7
627,503 - PS417_02755 0.26 +1.3
627,598 + PS417_02755 0.37 -0.0
627,598 + PS417_02755 0.37 +0.5
627,652 + -0.5
627,793 + PS417_02755 0.59 +0.3
627,794 - PS417_02755 0.60 +1.1
627,901 + PS417_02755 0.72 +1.6
627,916 + PS417_02755 0.74 +0.8
627,916 + PS417_02755 0.74 -0.7
627,948 + PS417_02755 0.77 +0.5
627,949 - PS417_02755 0.77 -0.7
627,949 - PS417_02755 0.77 +0.7
627,949 - PS417_02755 0.77 +1.6
627,949 - PS417_02755 0.77 +0.1
628,014 - PS417_02755 0.85 -1.7
628,138 + -0.2
628,138 + +0.2
628,138 + +0.4
628,138 + -0.2
628,139 - -0.5
628,203 - +0.8
628,205 - -1.2
628,242 + +0.3
628,243 - +0.1
628,259 + -0.1
628,260 - -1.1
628,260 - -1.3
628,297 + -1.1
628,471 + PS417_02760 0.29 -0.5
628,471 + PS417_02760 0.29 +0.1
628,471 + PS417_02760 0.29 -1.2
628,471 + PS417_02760 0.29 +2.8
628,472 - PS417_02760 0.29 +0.7
628,472 - PS417_02760 0.29 -1.5
628,492 + PS417_02760 0.32 +1.1
628,492 + PS417_02760 0.32 +0.5
628,493 - PS417_02760 0.32 -0.1
629,037 + +0.2
629,038 - -1.3
629,051 + -0.8
629,051 + +1.1
629,051 + -0.2
629,052 - +3.1

Or see this region's nucleotide sequence