Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02710 and PS417_02715 are separated by 276 nucleotides PS417_02715 and PS417_02720 are separated by 5 nucleotides PS417_02720 and PS417_02725 are separated by 150 nucleotides PS417_02725 and PS417_02730 are separated by 359 nucleotides
PS417_02710: PS417_02710 - Urease maturation and nickel insertion protein UreE <small>(from data)</small>, at 618,856 to 619,356
_02710
PS417_02715: PS417_02715 - hypothetical protein, at 619,633 to 620,130
_02715
PS417_02720: PS417_02720 - TetR family transcriptional regulator, at 620,136 to 620,768
_02720
PS417_02725: PS417_02725 - hypothetical protein, at 620,919 to 621,371
_02725
PS417_02730: PS417_02730 - hypothetical protein, at 621,731 to 623,800
_02730
Position (kb) 620
621 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 619.163 kb on - strand, within PS417_02710 at 619.372 kb on + strand at 619.373 kb on - strand at 619.390 kb on + strand at 619.391 kb on - strand at 619.391 kb on - strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.579 kb on + strand at 619.579 kb on + strand at 619.579 kb on + strand at 619.580 kb on - strand at 619.595 kb on - strand at 619.595 kb on - strand at 619.613 kb on - strand at 619.613 kb on - strand at 619.670 kb on + strand at 619.670 kb on + strand at 619.785 kb on + strand, within PS417_02715 at 619.792 kb on + strand, within PS417_02715 at 619.792 kb on + strand, within PS417_02715 at 619.793 kb on - strand, within PS417_02715 at 619.793 kb on - strand at 619.849 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.006 kb on - strand, within PS417_02715 at 620.006 kb on - strand, within PS417_02715 at 620.007 kb on + strand, within PS417_02715 at 620.008 kb on - strand, within PS417_02715 at 620.008 kb on - strand, within PS417_02715 at 620.009 kb on + strand, within PS417_02715 at 620.009 kb on + strand, within PS417_02715 at 620.010 kb on - strand, within PS417_02715 at 620.080 kb on + strand, within PS417_02715 at 620.081 kb on - strand at 620.095 kb on + strand at 620.095 kb on + strand at 620.095 kb on + strand at 620.138 kb on - strand at 620.183 kb on + strand at 620.183 kb on + strand at 620.183 kb on + strand at 620.184 kb on - strand at 620.184 kb on - strand at 620.583 kb on + strand at 620.642 kb on + strand, within PS417_02720 at 620.809 kb on - strand at 620.921 kb on - strand at 620.921 kb on - strand at 621.154 kb on + strand, within PS417_02725 at 621.209 kb on - strand, within PS417_02725 at 621.336 kb on - strand at 621.340 kb on - strand at 621.357 kb on + strand at 621.440 kb on - strand at 621.465 kb on - strand at 621.563 kb on - strand at 621.675 kb on + strand at 621.676 kb on - strand at 621.676 kb on - strand at 621.677 kb on + strand at 621.678 kb on - strand at 621.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 619,163 - PS417_02710 0.61 -1.7 619,372 + -0.1 619,373 - -0.6 619,390 + +0.2 619,391 - -0.7 619,391 - -0.5 619,436 + -1.7 619,436 + -2.1 619,436 + -0.1 619,436 + -0.3 619,579 + -0.4 619,579 + +0.3 619,579 + -0.8 619,580 - -0.5 619,595 - +0.3 619,595 - +0.1 619,613 - -0.3 619,613 - +0.7 619,670 + +0.3 619,670 + -1.1 619,785 + PS417_02715 0.31 -0.4 619,792 + PS417_02715 0.32 -0.8 619,792 + PS417_02715 0.32 +0.0 619,793 - PS417_02715 0.32 -0.2 619,793 - +1.5 619,849 + PS417_02715 0.43 -0.8 620,005 + PS417_02715 0.75 -0.0 620,005 + PS417_02715 0.75 -0.0 620,005 + PS417_02715 0.75 -0.2 620,005 + PS417_02715 0.75 -0.8 620,005 + PS417_02715 0.75 -0.1 620,005 + PS417_02715 0.75 -0.8 620,005 + PS417_02715 0.75 -0.2 620,005 + PS417_02715 0.75 -0.1 620,006 - PS417_02715 0.75 -0.7 620,006 - PS417_02715 0.75 -2.3 620,007 + PS417_02715 0.75 -0.0 620,008 - PS417_02715 0.75 +0.1 620,008 - PS417_02715 0.75 +0.4 620,009 + PS417_02715 0.76 -1.2 620,009 + PS417_02715 0.76 -0.0 620,010 - PS417_02715 0.76 -0.1 620,080 + PS417_02715 0.90 -0.5 620,081 - -0.3 620,095 + -0.1 620,095 + +1.7 620,095 + -1.2 620,138 - +0.1 620,183 + -2.5 620,183 + -1.1 620,183 + -0.5 620,184 - -2.4 620,184 - -1.1 620,583 + -1.1 620,642 + PS417_02720 0.80 -3.8 620,809 - -0.1 620,921 - +1.0 620,921 - -0.5 621,154 + PS417_02725 0.52 -0.8 621,209 - PS417_02725 0.64 +0.3 621,336 - -0.2 621,340 - +0.2 621,357 + +0.4 621,440 - +1.0 621,465 - +1.9 621,563 - -0.8 621,675 + +1.2 621,676 - +0.6 621,676 - +0.9 621,677 + -1.4 621,678 - +2.3 621,678 - +0.4
Or see this region's nucleotide sequence