Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27040 and PS417_27045 are separated by 63 nucleotides PS417_27045 and PS417_27050 are separated by 134 nucleotides PS417_27050 and PS417_27055 are separated by 37 nucleotides
PS417_27040: PS417_27040 - 3-phosphoglycerate dehydrogenase, at 5,839,290 to 5,840,519
_27040
PS417_27045: PS417_27045 - ATPase, at 5,840,583 to 5,841,023
_27045
PS417_27050: PS417_27050 - ABC transporter substrate-binding protein, at 5,841,158 to 5,841,652
_27050
PS417_27055: PS417_27055 - hypothetical protein, at 5,841,690 to 5,842,184
_27055
Position (kb) 5840
5841
5842 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5839.828 kb on - strand, within PS417_27040 at 5840.233 kb on - strand, within PS417_27040 at 5840.233 kb on - strand, within PS417_27040 at 5840.584 kb on + strand at 5840.584 kb on + strand at 5840.588 kb on + strand at 5840.616 kb on + strand at 5840.616 kb on + strand at 5840.617 kb on - strand at 5840.910 kb on + strand, within PS417_27045 at 5840.910 kb on + strand, within PS417_27045 at 5840.910 kb on + strand, within PS417_27045 at 5840.911 kb on - strand, within PS417_27045 at 5841.104 kb on + strand at 5841.104 kb on + strand at 5841.148 kb on - strand at 5841.180 kb on + strand at 5841.180 kb on + strand at 5841.181 kb on - strand at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.235 kb on - strand, within PS417_27050 at 5841.373 kb on + strand, within PS417_27050 at 5841.376 kb on + strand, within PS417_27050 at 5841.376 kb on + strand, within PS417_27050 at 5841.377 kb on - strand at 5841.422 kb on + strand, within PS417_27050 at 5841.423 kb on - strand, within PS417_27050 at 5841.423 kb on - strand, within PS417_27050 at 5841.448 kb on + strand, within PS417_27050 at 5841.691 kb on + strand at 5841.692 kb on - strand at 5841.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 5,839,828 - PS417_27040 0.44 -0.1 5,840,233 - PS417_27040 0.77 -0.1 5,840,233 - PS417_27040 0.77 -0.9 5,840,584 + -0.2 5,840,584 + +0.3 5,840,588 + -0.7 5,840,616 + -1.3 5,840,616 + -0.2 5,840,617 - +1.1 5,840,910 + PS417_27045 0.74 -1.6 5,840,910 + PS417_27045 0.74 -0.2 5,840,910 + PS417_27045 0.74 -1.0 5,840,911 - PS417_27045 0.74 -1.1 5,841,104 + -0.6 5,841,104 + -0.4 5,841,148 - -1.8 5,841,180 + +0.0 5,841,180 + +0.3 5,841,181 - -0.3 5,841,234 + PS417_27050 0.15 +0.3 5,841,234 + PS417_27050 0.15 +0.8 5,841,234 + PS417_27050 0.15 -2.6 5,841,234 + PS417_27050 0.15 +1.6 5,841,235 - PS417_27050 0.16 -0.0 5,841,373 + PS417_27050 0.43 -0.2 5,841,376 + PS417_27050 0.44 -1.5 5,841,376 + PS417_27050 0.44 +0.0 5,841,377 - +2.6 5,841,422 + PS417_27050 0.53 +0.5 5,841,423 - PS417_27050 0.54 +0.3 5,841,423 - PS417_27050 0.54 +0.9 5,841,448 + PS417_27050 0.59 +0.4 5,841,691 + -0.2 5,841,692 - +1.1 5,841,693 + +0.7
Or see this region's nucleotide sequence