Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02650 and PS417_02655 are separated by 374 nucleotides PS417_02655 and PS417_02660 are separated by 231 nucleotides
PS417_02650: PS417_02650 - FAD-dependent oxidoreductase, at 606,246 to 607,529
_02650
PS417_02655: PS417_02655 - amino acid ABC transporter substrate-binding protein, at 607,904 to 609,040
_02655
PS417_02660: PS417_02660 - branched-chain amino acid transporter permease subunit LivH, at 609,272 to 610,186
_02660
Position (kb) 607
608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 606.958 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.011 kb on + strand, within PS417_02650 at 607.012 kb on - strand, within PS417_02650 at 607.212 kb on + strand, within PS417_02650 at 607.212 kb on + strand, within PS417_02650 at 607.213 kb on - strand, within PS417_02650 at 607.245 kb on + strand, within PS417_02650 at 607.386 kb on + strand, within PS417_02650 at 607.386 kb on + strand at 607.390 kb on + strand, within PS417_02650 at 607.390 kb on + strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.463 kb on + strand at 607.464 kb on - strand at 607.473 kb on + strand at 607.495 kb on - strand at 607.666 kb on + strand at 607.667 kb on - strand at 607.728 kb on + strand at 607.735 kb on + strand at 607.779 kb on + strand at 607.919 kb on + strand at 608.045 kb on + strand, within PS417_02655 at 608.045 kb on + strand, within PS417_02655 at 608.046 kb on - strand, within PS417_02655 at 608.046 kb on - strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.250 kb on - strand, within PS417_02655 at 608.332 kb on + strand at 608.332 kb on + strand, within PS417_02655 at 608.333 kb on - strand, within PS417_02655 at 608.375 kb on + strand, within PS417_02655 at 608.433 kb on - strand, within PS417_02655 at 608.576 kb on + strand, within PS417_02655 at 608.577 kb on - strand, within PS417_02655 at 608.577 kb on - strand, within PS417_02655 at 608.670 kb on + strand, within PS417_02655 at 608.671 kb on - strand, within PS417_02655 at 608.726 kb on + strand, within PS417_02655 at 608.726 kb on + strand, within PS417_02655 at 608.727 kb on - strand, within PS417_02655 at 608.727 kb on - strand, within PS417_02655 at 608.817 kb on - strand, within PS417_02655 at 608.826 kb on - strand, within PS417_02655 at 608.826 kb on - strand, within PS417_02655 at 608.826 kb on - strand, within PS417_02655 at 608.982 kb on - strand at 608.990 kb on + strand at 608.991 kb on - strand at 609.015 kb on - strand at 609.038 kb on + strand at 609.039 kb on - strand at 609.039 kb on - strand at 609.044 kb on + strand at 609.127 kb on - strand at 609.139 kb on - strand at 609.139 kb on - strand at 609.139 kb on - strand at 609.202 kb on + strand at 609.280 kb on + strand at 609.281 kb on - strand at 609.281 kb on - strand at 609.360 kb on - strand at 609.401 kb on + strand, within PS417_02660 at 609.401 kb on + strand, within PS417_02660 at 609.402 kb on - strand, within PS417_02660 at 609.402 kb on - strand, within PS417_02660 at 609.403 kb on + strand, within PS417_02660 at 609.403 kb on + strand at 609.404 kb on - strand, within PS417_02660 at 609.404 kb on - strand, within PS417_02660 at 609.450 kb on - strand, within PS417_02660 at 609.450 kb on - strand, within PS417_02660 at 609.658 kb on + strand, within PS417_02660 at 609.659 kb on - strand, within PS417_02660 at 609.722 kb on + strand, within PS417_02660 at 609.723 kb on - strand, within PS417_02660 at 609.723 kb on - strand, within PS417_02660 at 609.724 kb on + strand, within PS417_02660 at 609.724 kb on + strand, within PS417_02660 at 609.776 kb on + strand, within PS417_02660 at 609.776 kb on + strand, within PS417_02660 at 609.776 kb on + strand, within PS417_02660 at 609.776 kb on + strand, within PS417_02660 at 609.777 kb on - strand, within PS417_02660 at 609.777 kb on - strand, within PS417_02660 at 609.777 kb on - strand, within PS417_02660 at 609.777 kb on - strand, within PS417_02660 at 609.777 kb on - strand, within PS417_02660 at 609.777 kb on - strand, within PS417_02660 at 609.777 kb on - strand, within PS417_02660 at 609.788 kb on + strand, within PS417_02660 at 609.879 kb on - strand, within PS417_02660 at 609.879 kb on - strand, within PS417_02660 at 609.879 kb on - strand, within PS417_02660 at 609.938 kb on + strand, within PS417_02660
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 606,958 - PS417_02650 0.55 +1.0 607,009 - PS417_02650 0.59 -0.8 607,009 - PS417_02650 0.59 -1.1 607,011 + PS417_02650 0.60 +0.2 607,012 - PS417_02650 0.60 +0.5 607,212 + PS417_02650 0.75 +0.2 607,212 + PS417_02650 0.75 -2.2 607,213 - PS417_02650 0.75 -0.6 607,245 + PS417_02650 0.78 +0.5 607,386 + PS417_02650 0.89 -0.9 607,386 + -1.1 607,390 + PS417_02650 0.89 -0.8 607,390 + PS417_02650 0.89 +0.4 607,391 - PS417_02650 0.89 -0.5 607,391 - PS417_02650 0.89 -0.4 607,391 - PS417_02650 0.89 -0.3 607,463 + -2.0 607,464 - +0.8 607,473 + -0.8 607,495 - +0.6 607,666 + +0.4 607,667 - +1.1 607,728 + -0.5 607,735 + +0.1 607,779 + +1.1 607,919 + -0.4 608,045 + PS417_02655 0.12 +0.9 608,045 + PS417_02655 0.12 -0.5 608,046 - PS417_02655 0.12 +0.1 608,046 - PS417_02655 0.12 -0.4 608,249 + PS417_02655 0.30 +0.5 608,249 + PS417_02655 0.30 -0.5 608,249 + PS417_02655 0.30 -0.4 608,250 - PS417_02655 0.30 +1.0 608,332 + -0.1 608,332 + PS417_02655 0.38 +1.3 608,333 - PS417_02655 0.38 +2.1 608,375 + PS417_02655 0.41 +1.2 608,433 - PS417_02655 0.47 +1.1 608,576 + PS417_02655 0.59 -0.3 608,577 - PS417_02655 0.59 +1.9 608,577 - PS417_02655 0.59 +0.2 608,670 + PS417_02655 0.67 +0.1 608,671 - PS417_02655 0.67 -2.0 608,726 + PS417_02655 0.72 -2.4 608,726 + PS417_02655 0.72 +0.6 608,727 - PS417_02655 0.72 +0.3 608,727 - PS417_02655 0.72 +0.3 608,817 - PS417_02655 0.80 -0.2 608,826 - PS417_02655 0.81 -0.2 608,826 - PS417_02655 0.81 +1.0 608,826 - PS417_02655 0.81 +0.1 608,982 - +0.4 608,990 + +0.9 608,991 - -0.8 609,015 - -0.0 609,038 + +0.1 609,039 - -3.0 609,039 - +0.1 609,044 + +0.9 609,127 - +0.5 609,139 - -2.8 609,139 - -0.2 609,139 - +1.5 609,202 + -0.2 609,280 + +0.5 609,281 - +0.1 609,281 - -0.3 609,360 - -1.7 609,401 + PS417_02660 0.14 -0.6 609,401 + PS417_02660 0.14 +1.8 609,402 - PS417_02660 0.14 +0.1 609,402 - PS417_02660 0.14 -0.5 609,403 + PS417_02660 0.14 -0.7 609,403 + -0.8 609,404 - PS417_02660 0.14 -0.0 609,404 - PS417_02660 0.14 +0.1 609,450 - PS417_02660 0.19 +0.6 609,450 - PS417_02660 0.19 -0.1 609,658 + PS417_02660 0.42 -0.2 609,659 - PS417_02660 0.42 -1.1 609,722 + PS417_02660 0.49 +0.4 609,723 - PS417_02660 0.49 -1.2 609,723 - PS417_02660 0.49 +0.1 609,724 + PS417_02660 0.49 +0.9 609,724 + PS417_02660 0.49 +0.2 609,776 + PS417_02660 0.55 +1.0 609,776 + PS417_02660 0.55 +0.3 609,776 + PS417_02660 0.55 -0.8 609,776 + PS417_02660 0.55 -0.5 609,777 - PS417_02660 0.55 +0.2 609,777 - PS417_02660 0.55 -0.3 609,777 - PS417_02660 0.55 -0.7 609,777 - PS417_02660 0.55 +0.7 609,777 - PS417_02660 0.55 -0.0 609,777 - PS417_02660 0.55 +0.1 609,777 - PS417_02660 0.55 -1.3 609,788 + PS417_02660 0.56 -0.2 609,879 - PS417_02660 0.66 +0.8 609,879 - PS417_02660 0.66 +1.5 609,879 - PS417_02660 0.66 -3.6 609,938 + PS417_02660 0.73 -1.8
Or see this region's nucleotide sequence