Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26415 and PS417_26420 are separated by 282 nucleotides PS417_26420 and PS417_26425 are separated by 61 nucleotides PS417_26425 and PS417_26430 are separated by 29 nucleotides PS417_26430 and PS417_26435 are separated by 17 nucleotides
PS417_26415: PS417_26415 - fructose-1,6-bisphosphate aldolase, at 5,712,957 to 5,714,021
_26415
PS417_26420: PS417_26420 - hypothetical protein, at 5,714,304 to 5,714,639
_26420
PS417_26425: PS417_26425 - hypothetical protein, at 5,714,701 to 5,714,928
_26425
PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121
_26430
PS417_26435: PS417_26435 - glyceraldehyde-3-phosphate dehydrogenase, at 5,716,139 to 5,717,194
_26435
Position (kb)
5714
5715
5716
5717 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5714.092 kb on - strand at 5714.154 kb on + strand at 5714.154 kb on + strand at 5714.155 kb on - strand at 5714.238 kb on - strand at 5714.404 kb on + strand, within PS417_26420 at 5714.405 kb on - strand, within PS417_26420 at 5715.000 kb on + strand at 5715.073 kb on + strand at 5715.073 kb on + strand at 5715.351 kb on + strand, within PS417_26430 at 5716.141 kb on - strand at 5716.141 kb on - strand at 5716.141 kb on - strand at 5716.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 5,714,092 - +0.5 5,714,154 + -0.5 5,714,154 + +1.2 5,714,155 - +1.7 5,714,238 - +0.3 5,714,404 + PS417_26420 0.30 -1.1 5,714,405 - PS417_26420 0.30 +0.5 5,715,000 + +1.3 5,715,073 + +1.4 5,715,073 + +0.5 5,715,351 + PS417_26430 0.34 +0.2 5,716,141 - -0.0 5,716,141 - +1.1 5,716,141 - -2.9 5,716,156 + +0.2
Or see this region's nucleotide sequence