Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25755 and PS417_25760 are separated by 43 nucleotides PS417_25760 and PS417_25765 are separated by 214 nucleotides PS417_25765 and PS417_25770 are separated by 18 nucleotides
PS417_25755: PS417_25755 - spermidine/putrescine ABC transporter substrate-binding protein, at 5,559,972 to 5,561,012
_25755
PS417_25760: PS417_25760 - spermidine/putrescine ABC transporter ATP-binding protein, at 5,561,056 to 5,562,168
_25760
PS417_25765: PS417_25765 - transcriptional regulator, at 5,562,383 to 5,563,012
_25765
PS417_25770: PS417_25770 - ABC transporter substrate-binding protein, at 5,563,031 to 5,565,025
_25770
Position (kb) 5561
5562
5563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5560.138 kb on + strand, within PS417_25755 at 5560.327 kb on + strand, within PS417_25755 at 5560.328 kb on - strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.469 kb on - strand, within PS417_25755 at 5560.469 kb on - strand, within PS417_25755 at 5560.520 kb on - strand, within PS417_25755 at 5560.681 kb on + strand, within PS417_25755 at 5560.834 kb on + strand, within PS417_25755 at 5560.835 kb on - strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5561.209 kb on + strand, within PS417_25760 at 5561.209 kb on + strand, within PS417_25760 at 5561.209 kb on + strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.225 kb on + strand, within PS417_25760 at 5561.225 kb on + strand, within PS417_25760 at 5561.226 kb on - strand, within PS417_25760 at 5561.480 kb on + strand, within PS417_25760 at 5561.480 kb on + strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.894 kb on + strand, within PS417_25760 at 5561.894 kb on + strand, within PS417_25760 at 5561.925 kb on + strand, within PS417_25760 at 5562.111 kb on - strand at 5562.169 kb on - strand at 5562.169 kb on - strand at 5562.208 kb on + strand at 5562.369 kb on - strand at 5562.384 kb on + strand at 5562.385 kb on - strand at 5562.385 kb on - strand at 5562.409 kb on - strand at 5562.436 kb on + strand at 5562.642 kb on + strand, within PS417_25765 at 5562.643 kb on - strand, within PS417_25765 at 5563.033 kb on - strand at 5563.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 5,560,138 + PS417_25755 0.16 -0.1 5,560,327 + PS417_25755 0.34 +1.0 5,560,328 - PS417_25755 0.34 -0.1 5,560,468 + PS417_25755 0.48 +1.5 5,560,468 + PS417_25755 0.48 -1.1 5,560,468 + PS417_25755 0.48 +1.5 5,560,469 - PS417_25755 0.48 -0.8 5,560,469 - PS417_25755 0.48 +0.2 5,560,520 - PS417_25755 0.53 -0.1 5,560,681 + PS417_25755 0.68 -1.4 5,560,834 + PS417_25755 0.83 +0.4 5,560,835 - PS417_25755 0.83 -0.5 5,560,882 + PS417_25755 0.87 +1.5 5,560,882 + PS417_25755 0.87 +0.5 5,560,882 + +3.1 5,560,882 + PS417_25755 0.87 -0.1 5,560,882 + PS417_25755 0.87 +0.3 5,560,883 - PS417_25755 0.88 -0.1 5,560,883 - PS417_25755 0.88 +0.1 5,560,883 - PS417_25755 0.88 +0.7 5,560,883 - PS417_25755 0.88 +0.2 5,561,209 + PS417_25760 0.14 -2.3 5,561,209 + PS417_25760 0.14 -1.3 5,561,209 + PS417_25760 0.14 +1.5 5,561,210 - PS417_25760 0.14 +0.2 5,561,210 - PS417_25760 0.14 +1.7 5,561,210 - PS417_25760 0.14 -0.1 5,561,225 + PS417_25760 0.15 +0.4 5,561,225 + PS417_25760 0.15 +0.8 5,561,226 - PS417_25760 0.15 -1.1 5,561,480 + PS417_25760 0.38 -1.0 5,561,480 + PS417_25760 0.38 +2.2 5,561,580 - PS417_25760 0.47 +1.1 5,561,580 - PS417_25760 0.47 +2.1 5,561,580 - PS417_25760 0.47 -3.0 5,561,894 + PS417_25760 0.75 +2.8 5,561,894 + PS417_25760 0.75 -0.2 5,561,925 + PS417_25760 0.78 +1.5 5,562,111 - -0.3 5,562,169 - +0.1 5,562,169 - +3.8 5,562,208 + +0.8 5,562,369 - -0.1 5,562,384 + -0.2 5,562,385 - +0.1 5,562,385 - -0.3 5,562,409 - -1.2 5,562,436 + -1.1 5,562,642 + PS417_25765 0.41 +0.1 5,562,643 - PS417_25765 0.41 -1.9 5,563,033 - +0.8 5,563,033 - -1.1
Or see this region's nucleotide sequence