Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02475 and PS417_02480 overlap by 1 nucleotides PS417_02480 and PS417_02485 overlap by 1 nucleotides
PS417_02475: PS417_02475 - N-acetylmuramoyl-L-alanine amidase, at 565,078 to 566,499
_02475
PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415
_02480
PS417_02485: PS417_02485 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 568,415 to 569,386
_02485
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.409 kb on + strand at 567.285 kb on + strand, within PS417_02480 at 567.285 kb on + strand, within PS417_02480 at 567.660 kb on + strand, within PS417_02480 at 567.661 kb on - strand, within PS417_02480 at 567.700 kb on - strand, within PS417_02480 at 567.705 kb on + strand, within PS417_02480 at 567.706 kb on - strand, within PS417_02480 at 567.830 kb on + strand, within PS417_02480 at 567.873 kb on + strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 568.171 kb on + strand, within PS417_02480 at 568.700 kb on - strand, within PS417_02485 at 568.731 kb on - strand, within PS417_02485 at 569.016 kb on - strand, within PS417_02485 at 569.018 kb on - strand, within PS417_02485 at 569.092 kb on + strand, within PS417_02485 at 569.093 kb on - strand, within PS417_02485 at 569.124 kb on + strand, within PS417_02485 at 569.179 kb on - strand, within PS417_02485
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 566,296 + PS417_02475 0.86 -0.1 566,296 + PS417_02475 0.86 +1.1 566,296 + +0.5 566,297 - PS417_02475 0.86 -0.7 566,297 - PS417_02475 0.86 +1.0 566,297 - PS417_02475 0.86 -0.3 566,297 - PS417_02475 0.86 -0.5 566,409 + -1.6 567,285 + PS417_02480 0.41 +1.0 567,285 + PS417_02480 0.41 +2.5 567,660 + PS417_02480 0.61 +0.5 567,661 - PS417_02480 0.61 +1.4 567,700 - PS417_02480 0.63 +2.8 567,705 + PS417_02480 0.63 +1.3 567,706 - PS417_02480 0.63 -0.4 567,830 + PS417_02480 0.69 +3.3 567,873 + PS417_02480 0.72 +1.5 567,874 - PS417_02480 0.72 +0.5 567,874 - PS417_02480 0.72 -2.3 568,171 + PS417_02480 0.87 +0.8 568,700 - PS417_02485 0.29 -1.1 568,731 - PS417_02485 0.33 +0.3 569,016 - PS417_02485 0.62 -3.5 569,018 - PS417_02485 0.62 -1.3 569,092 + PS417_02485 0.70 +0.9 569,093 - PS417_02485 0.70 -2.6 569,124 + PS417_02485 0.73 +0.7 569,179 - PS417_02485 0.79 -2.2
Or see this region's nucleotide sequence