Strain Fitness in Pseudomonas simiae WCS417 around PS417_24820

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
5,383,320	-		PS417_24815	0.58	+0.2
5,383,320	-		PS417_24815	0.58	-0.5
5,383,451	+		PS417_24815	0.67	-0.9
5,383,451	+		PS417_24815	0.67	+3.0
5,383,451	+		PS417_24815	0.67	+3.0
5,383,451	+		PS417_24815	0.67	+2.7
5,383,451	+		PS417_24815	0.67	-0.1
5,383,452	-				-0.1
5,383,452	-		PS417_24815	0.67	+1.5
5,383,452	-		PS417_24815	0.67	+0.5
5,383,640	+		PS417_24815	0.80	-1.7
5,383,641	-		PS417_24815	0.80	+1.9
5,383,746	+		PS417_24815	0.87	-1.3
5,383,747	-		PS417_24815	0.87	-0.9
5,383,817	+				-1.1
5,383,817	+				+0.5
5,383,818	-				-0.1
5,383,818	-				-2.0
5,383,818	-				-0.2
5,383,818	-				+1.6
5,383,825	-				-0.1
5,383,827	+				+0.3
5,383,827	+				-2.3
5,383,827	+				+0.2
5,383,828	-				+0.8
5,383,828	-				-1.2
5,383,828	-				-0.1
5,383,835	+				+1.0
5,383,835	+				+0.6
5,383,836	-				-0.9
5,383,867	-				+0.5
5,383,935	-				+2.8
5,383,979	+				-0.5
5,383,979	+				-0.3
5,383,980	-				-0.0
5,383,980	-				-0.1
5,383,980	-				+0.4
5,384,017	-				-1.7
5,384,142	-		PS417_24820	0.12	+0.1
5,384,480	+		PS417_24820	0.36	+0.7
5,384,698	+		PS417_24820	0.51	-0.5
5,384,838	+		PS417_24820	0.62	+2.5
5,384,839	-		PS417_24820	0.62	-2.1
5,384,957	+		PS417_24820	0.70	-0.6
5,384,958	-		PS417_24820	0.70	-1.7
5,384,973	-		PS417_24820	0.71	-0.3
5,384,991	+		PS417_24820	0.72	+0.7
5,384,992	-		PS417_24820	0.73	+0.1
5,385,046	+		PS417_24820	0.76	+0.7
5,385,046	+		PS417_24820	0.76	-0.1
5,385,047	-		PS417_24820	0.76	-1.1
5,385,047	-		PS417_24820	0.76	-0.1
5,385,078	+		PS417_24820	0.79	-1.4
5,385,079	-		PS417_24820	0.79	-0.1
5,385,185	+		PS417_24820	0.86	-1.8
5,385,185	+		PS417_24820	0.86	-1.7
5,385,185	+		PS417_24820	0.86	-0.4
5,385,186	-		PS417_24820	0.86	-0.1
5,385,186	-		PS417_24820	0.86	-0.5
5,385,195	+		PS417_24820	0.87	-1.1
5,385,195	+		PS417_24820	0.87	+0.3
5,385,195	+		PS417_24820	0.87	-3.3
5,385,630	-		PS417_24825	0.31	+1.7
5,385,732	+		PS417_24825	0.43	-1.0
5,385,766	+		PS417_24825	0.47	+1.9
5,385,962	+		PS417_24825	0.71	+0.9
5,385,962	+		PS417_24825	0.71	-0.1
5,385,963	-		PS417_24825	0.71	-0.0
5,385,972	-		PS417_24825	0.72	+0.0
5,385,972	-		PS417_24825	0.72	-0.2
5,385,972	-		PS417_24825	0.72	+0.1
5,385,972	-		PS417_24825	0.72	-0.2
5,386,023	+		PS417_24825	0.78	-1.4
5,386,043	+		PS417_24825	0.81	-1.4
5,386,043	+		PS417_24825	0.81	-0.1
5,386,070	+		PS417_24825	0.84	-0.1
5,386,236	-				+0.3
5,386,271	-				-0.4