Strain Fitness in Pseudomonas simiae WCS417 around PS417_24815

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
5,381,511	+		PS417_24810	0.46	+0.2
5,381,517	+		PS417_24810	0.46	-0.4
5,381,640	+		PS417_24810	0.54	+0.3
5,381,755	+		PS417_24810	0.62	+0.5
5,381,879	-		PS417_24810	0.70	+0.9
5,381,879	-		PS417_24810	0.70	+0.7
5,381,931	-		PS417_24810	0.73	+0.8
5,381,963	-		PS417_24810	0.75	-0.7
5,381,965	+		PS417_24810	0.76	+0.1
5,381,965	+		PS417_24810	0.76	+0.3
5,381,965	+		PS417_24810	0.76	+2.6
5,381,965	+		PS417_24810	0.76	+0.7
5,381,965	+		PS417_24810	0.76	-2.2
5,381,966	-		PS417_24810	0.76	-0.1
5,381,966	-		PS417_24810	0.76	-0.9
5,381,966	-		PS417_24810	0.76	+1.0
5,381,966	-		PS417_24810	0.76	+0.3
5,381,966	-		PS417_24810	0.76	-0.2
5,381,966	-		PS417_24810	0.76	+1.7
5,382,316	-				-0.3
5,382,334	+				+1.2
5,382,347	+				+0.9
5,382,348	-				-0.6
5,382,348	-				-1.3
5,382,436	-				+0.6
5,382,464	-				-1.3
5,382,473	-				-0.7
5,382,485	+				+0.2
5,382,485	+				-1.9
5,382,485	+				+0.6
5,382,485	+				-0.6
5,382,486	-				+0.3
5,382,508	+				-0.3
5,382,617	+				-0.1
5,382,617	+				+1.0
5,382,617	+				+0.1
5,382,618	-				-0.2
5,382,713	+		PS417_24815	0.15	+0.3
5,382,713	+		PS417_24815	0.15	-0.2
5,382,713	+		PS417_24815	0.15	+0.1
5,382,714	-		PS417_24815	0.15	-1.1
5,382,714	-		PS417_24815	0.15	+0.5
5,382,761	-		PS417_24815	0.19	-0.3
5,382,846	-		PS417_24815	0.25	+0.2
5,382,926	+		PS417_24815	0.30	+0.5
5,382,926	+		PS417_24815	0.30	+0.5
5,382,926	+		PS417_24815	0.30	+1.3
5,382,927	-		PS417_24815	0.30	+0.7
5,382,927	-		PS417_24815	0.30	+0.2
5,382,927	-		PS417_24815	0.30	+0.2
5,382,938	+		PS417_24815	0.31	-2.3
5,382,939	-		PS417_24815	0.31	+0.5
5,382,939	-		PS417_24815	0.31	-0.3
5,383,320	-		PS417_24815	0.58	+0.2
5,383,320	-		PS417_24815	0.58	-0.5
5,383,451	+		PS417_24815	0.67	-0.9
5,383,451	+		PS417_24815	0.67	+3.0
5,383,451	+		PS417_24815	0.67	+3.0
5,383,451	+		PS417_24815	0.67	+2.7
5,383,451	+		PS417_24815	0.67	-0.1
5,383,452	-				-0.1
5,383,452	-		PS417_24815	0.67	+1.5
5,383,452	-		PS417_24815	0.67	+0.5
5,383,640	+		PS417_24815	0.80	-1.7
5,383,641	-		PS417_24815	0.80	+1.9
5,383,746	+		PS417_24815	0.87	-1.3
5,383,747	-		PS417_24815	0.87	-0.9
5,383,817	+				-1.1
5,383,817	+				+0.5
5,383,818	-				-0.1
5,383,818	-				-2.0
5,383,818	-				-0.2
5,383,818	-				+1.6
5,383,825	-				-0.1
5,383,827	+				+0.3
5,383,827	+				-2.3
5,383,827	+				+0.2
5,383,828	-				+0.8
5,383,828	-				-1.2
5,383,828	-				-0.1
5,383,835	+				+1.0
5,383,835	+				+0.6
5,383,836	-				-0.9
5,383,867	-				+0.5
5,383,935	-				+2.8
5,383,979	+				-0.5
5,383,979	+				-0.3
5,383,980	-				-0.0
5,383,980	-				-0.1
5,383,980	-				+0.4
5,384,017	-				-1.7
5,384,142	-		PS417_24820	0.12	+0.1
5,384,480	+		PS417_24820	0.36	+0.7
5,384,698	+		PS417_24820	0.51	-0.5
5,384,838	+		PS417_24820	0.62	+2.5
5,384,839	-		PS417_24820	0.62	-2.1