Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24755 and PS417_24760 overlap by 4 nucleotides PS417_24760 and PS417_24765 are separated by 21 nucleotides PS417_24765 and PS417_24770 overlap by 4 nucleotides
PS417_24755: PS417_24755 - phosphoesterase, at 5,370,076 to 5,371,392
_24755
PS417_24760: PS417_24760 - ATP-dependent protease, at 5,371,389 to 5,371,979
_24760
PS417_24765: PS417_24765 - membrane protein, at 5,372,001 to 5,372,717
_24765
PS417_24770: PS417_24770 - murein hydrolase transporter LrgA, at 5,372,714 to 5,373,067
_24770
Position (kb) 5371
5372 Strain fitness (log2 ratio) -2
-1
0
1 at 5370.395 kb on - strand, within PS417_24755 at 5370.395 kb on - strand, within PS417_24755 at 5370.406 kb on + strand, within PS417_24755 at 5370.407 kb on - strand, within PS417_24755 at 5370.456 kb on + strand, within PS417_24755 at 5370.547 kb on + strand, within PS417_24755 at 5370.548 kb on - strand, within PS417_24755 at 5370.698 kb on + strand, within PS417_24755 at 5370.741 kb on + strand, within PS417_24755 at 5370.899 kb on + strand, within PS417_24755 at 5370.900 kb on - strand, within PS417_24755 at 5371.382 kb on - strand at 5371.387 kb on + strand at 5371.387 kb on + strand at 5371.388 kb on - strand at 5371.388 kb on - strand at 5371.391 kb on - strand at 5371.391 kb on - strand at 5371.391 kb on - strand at 5371.507 kb on + strand, within PS417_24760 at 5371.980 kb on - strand at 5371.980 kb on - strand at 5372.003 kb on - strand at 5372.173 kb on - strand, within PS417_24765 at 5372.191 kb on + strand, within PS417_24765 at 5372.394 kb on + strand, within PS417_24765 at 5372.406 kb on - strand, within PS417_24765 at 5372.531 kb on - strand, within PS417_24765 at 5372.639 kb on - strand, within PS417_24765
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 5,370,395 - PS417_24755 0.24 +0.6 5,370,395 - PS417_24755 0.24 +0.5 5,370,406 + PS417_24755 0.25 -1.9 5,370,407 - PS417_24755 0.25 +0.0 5,370,456 + PS417_24755 0.29 +1.2 5,370,547 + PS417_24755 0.36 +0.5 5,370,548 - PS417_24755 0.36 -0.9 5,370,698 + PS417_24755 0.47 +0.5 5,370,741 + PS417_24755 0.50 -1.6 5,370,899 + PS417_24755 0.62 -1.2 5,370,900 - PS417_24755 0.63 -0.4 5,371,382 - -0.9 5,371,387 + +0.6 5,371,387 + -0.4 5,371,388 - -1.1 5,371,388 - -1.5 5,371,391 - -1.5 5,371,391 - -0.2 5,371,391 - +0.3 5,371,507 + PS417_24760 0.20 +0.3 5,371,980 - +0.1 5,371,980 - +0.4 5,372,003 - +1.1 5,372,173 - PS417_24765 0.24 +0.2 5,372,191 + PS417_24765 0.26 +0.2 5,372,394 + PS417_24765 0.55 +0.2 5,372,406 - PS417_24765 0.56 -1.3 5,372,531 - PS417_24765 0.74 +0.4 5,372,639 - PS417_24765 0.89 +0.9
Or see this region's nucleotide sequence