Strain Fitness in Pseudomonas simiae WCS417 around PS417_24065

Experiment: Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24060 and PS417_24065 are separated by 102 nucleotidesPS417_24065 and PS417_24070 are separated by 254 nucleotides PS417_24060: PS417_24060 - molecular chaperone DnaK, at 5,209,919 to 5,211,841 _24060 PS417_24065: PS417_24065 - heat shock protein GrpE, at 5,211,944 to 5,212,507 _24065 PS417_24070: PS417_24070 - recombination and repair protein, at 5,212,762 to 5,214,435 _24070 Position (kb) 5211 5212 5213Strain fitness (log2 ratio) -1 0 1at 5212.725 kb on + strandat 5212.781 kb on + strandat 5212.785 kb on + strandat 5212.786 kb on - strandat 5212.789 kb on + strandat 5212.790 kb on - strandat 5212.839 kb on - strandat 5213.020 kb on - strand, within PS417_24070at 5213.113 kb on - strand, within PS417_24070at 5213.206 kb on + strand, within PS417_24070

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml
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5,212,725 + -0.3
5,212,781 + -0.8
5,212,785 + -0.7
5,212,786 - +0.2
5,212,789 + -0.4
5,212,790 - -1.2
5,212,839 - -1.2
5,213,020 - PS417_24070 0.15 -0.1
5,213,113 - PS417_24070 0.21 +0.2
5,213,206 + PS417_24070 0.27 -0.1

Or see this region's nucleotide sequence