Strain Fitness in Pseudomonas simiae WCS417 around PS417_24055

Experiment: Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24050 and PS417_24055 are separated by 10 nucleotidesPS417_24055 and PS417_24060 are separated by 317 nucleotides PS417_24050: PS417_24050 - dihydrodipicolinate reductase, at 5,207,660 to 5,208,466 _24050 PS417_24055: PS417_24055 - molecular chaperone DnaJ, at 5,208,477 to 5,209,601 _24055 PS417_24060: PS417_24060 - molecular chaperone DnaK, at 5,209,919 to 5,211,841 _24060 Position (kb) 5208 5209 5210Strain fitness (log2 ratio) -1 0 1at 5207.625 kb on + strandat 5207.625 kb on + strandat 5207.626 kb on - strandat 5207.631 kb on + strandat 5207.650 kb on + strandat 5209.652 kb on - strandat 5209.671 kb on - strandat 5209.671 kb on - strandat 5209.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml
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5,207,625 + -0.2
5,207,625 + +0.9
5,207,626 - -0.8
5,207,631 + +1.3
5,207,650 + +1.3
5,209,652 - -0.3
5,209,671 - +0.5
5,209,671 - +0.8
5,209,715 - -0.5

Or see this region's nucleotide sequence