Strain Fitness in Pseudomonas simiae WCS417 around PS417_24005

Experiment: Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23995 and PS417_24000 are separated by 4 nucleotidesPS417_24000 and PS417_24005 are separated by 66 nucleotidesPS417_24005 and PS417_24010 are separated by 16 nucleotidesPS417_24010 and PS417_24015 are separated by 8 nucleotides PS417_23995: PS417_23995 - preprotein translocase subunit SecG, at 5,195,421 to 5,195,804 _23995 PS417_24000: PS417_24000 - triosephosphate isomerase, at 5,195,809 to 5,196,564 _24000 PS417_24005: PS417_24005 - phosphoglucosamine mutase, at 5,196,631 to 5,197,968 _24005 PS417_24010: PS417_24010 - dihydropteroate synthase, at 5,197,985 to 5,198,836 _24010 PS417_24015: PS417_24015 - ATP-dependent metalloprotease, at 5,198,845 to 5,200,755 _24015 Position (kb) 5196 5197 5198Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5195.682 kb on - strand, within PS417_23995at 5196.649 kb on + strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5198.847 kb on - strandat 5198.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml
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5,195,682 - PS417_23995 0.68 -0.5
5,196,649 + -2.0
5,197,969 - -0.1
5,197,969 - -2.5
5,197,969 - -1.2
5,197,969 - -4.0
5,198,847 - -0.5
5,198,847 - +0.3

Or see this region's nucleotide sequence