Strain Fitness in Pseudomonas simiae WCS417 around PS417_02280

Experiment: Doxycycline hyclate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02270 and PS417_02275 are separated by 0 nucleotidesPS417_02275 and PS417_02280 overlap by 4 nucleotidesPS417_02280 and PS417_02285 are separated by 59 nucleotides PS417_02270: PS417_02270 - carbamoyltransferase, at 518,175 to 519,932 _02270 PS417_02275: PS417_02275 - acetyltransferase, at 519,933 to 520,829 _02275 PS417_02280: PS417_02280 - GlcNAc-PI de-N-acetylase, at 520,826 to 522,226 _02280 PS417_02285: PS417_02285 - glycosyl transferase family 1, at 522,286 to 523,434 _02285 Position (kb) 520 521 522 523Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 520.642 kb on - strand, within PS417_02275at 520.825 kb on + strandat 520.825 kb on + strandat 521.025 kb on - strand, within PS417_02280at 521.802 kb on + strand, within PS417_02280at 521.839 kb on + strand, within PS417_02280at 522.259 kb on - strandat 522.286 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml
remove
520,642 - PS417_02275 0.79 -0.3
520,825 + +0.2
520,825 + +1.5
521,025 - PS417_02280 0.14 +3.0
521,802 + PS417_02280 0.70 -1.5
521,839 + PS417_02280 0.72 -3.7
522,259 - +3.0
522,286 - +5.4

Or see this region's nucleotide sequence