Strain Fitness in Pseudomonas simiae WCS417 around PS417_22675

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,909,052	+		PS417_22670	0.11	-0.1
4,909,053	-		PS417_22670	0.11	-0.0
4,909,053	-		PS417_22670	0.11	+0.2
4,909,058	-		PS417_22670	0.12	-1.0
4,909,205	+		PS417_22670	0.28	-1.3
4,909,373	+		PS417_22670	0.46	-0.1
4,909,373	+		PS417_22670	0.46	+0.3
4,909,373	+		PS417_22670	0.46	-0.2
4,909,373	+		PS417_22670	0.46	+0.6
4,909,374	-		PS417_22670	0.46	-1.5
4,909,523	+		PS417_22670	0.62	-1.1
4,909,592	+				+0.3
4,909,593	-		PS417_22670	0.69	-1.0
4,909,815	-				-0.7
4,909,879	+				+0.6
4,909,879	+				-1.5
4,909,950	+				-0.2
4,909,950	+				+0.0
4,909,951	-				-1.3
4,909,994	+				-1.0
4,910,243	+		PS417_22675	0.17	-0.2
4,910,243	+		PS417_22675	0.17	-0.8
4,910,243	+		PS417_22675	0.17	-0.2
4,910,243	+		PS417_22675	0.17	-0.4
4,910,243	+		PS417_22675	0.17	-0.9
4,910,244	-		PS417_22675	0.17	-1.7
4,910,385	-		PS417_22675	0.26	-0.4
4,910,901	-		PS417_22675	0.61	-2.6
4,911,027	+		PS417_22675	0.70	-0.2
4,911,063	+		PS417_22675	0.72	-0.4
4,911,063	+		PS417_22675	0.72	-0.5
4,911,063	+		PS417_22675	0.72	-0.9
4,911,063	+		PS417_22675	0.72	-0.3
4,911,064	-		PS417_22675	0.72	+0.1
4,911,064	-		PS417_22675	0.72	-1.5
4,911,064	-		PS417_22675	0.72	-0.1
4,911,751	+		PS417_22680	0.40	-0.7
4,911,879	+		PS417_22680	0.57	-0.4
4,911,879	+		PS417_22680	0.57	-0.8
4,911,880	-		PS417_22680	0.57	+1.2
4,911,880	-		PS417_22680	0.57	-0.7
4,911,880	-		PS417_22680	0.57	-2.1
4,912,122	+				+0.0
4,912,123	-				-0.3
4,912,123	-				+0.3
4,912,123	-				+0.3
4,912,123	-				+0.3
4,912,178	-				+0.3
4,912,222	+				-0.1
4,912,222	+				-0.1
4,912,222	+				+1.3
4,912,223	-				-0.2
4,912,223	-				-1.2
4,912,223	-				-0.6
4,912,320	+				-0.2
4,912,320	+				-0.6
4,912,331	-				-0.6
4,912,331	-				+0.3
4,912,417	+				+0.3