Strain Fitness in Pseudomonas simiae WCS417 around PS417_22070

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,781,476	+		PS417_22065	0.68	+1.4
4,781,500	+		PS417_22065	0.70	+0.7
4,781,501	-				+2.3
4,781,632	-		PS417_22065	0.78	+1.4
4,781,845	+				+4.0
4,781,857	+				+1.7
4,781,857	+				+0.8
4,781,857	+				+0.9
4,781,858	-				+0.3
4,781,983	+				+1.0
4,781,983	+				+0.9
4,781,984	-				-1.5
4,781,987	+				+1.2
4,781,987	+				+1.8
4,781,987	+				+0.3
4,781,987	+				-0.0
4,781,988	-				+0.1
4,782,074	-				-1.6
4,782,143	+				+1.5
4,782,193	+				-1.0
4,782,209	-				-1.5
4,782,338	+				-1.0
4,782,339	-				-1.1
4,782,339	-				-1.0
4,782,352	+				+0.4
4,782,352	+				+0.3
4,782,352	+				+1.3
4,782,353	-				-1.5
4,782,481	+				+0.3
4,782,481	+				-1.5
4,782,481	+				-0.2
4,782,482	-				+0.1
4,782,498	+				+0.1
4,782,847	+		PS417_22070	0.26	+0.4
4,782,847	+		PS417_22070	0.26	-0.2
4,782,848	-		PS417_22070	0.26	+0.6
4,782,848	-		PS417_22070	0.26	+0.0
4,783,153	+		PS417_22070	0.44	-2.4
4,783,154	-		PS417_22070	0.44	+0.3
4,783,198	+		PS417_22070	0.47	-0.9
4,783,284	+		PS417_22070	0.52	-0.1
4,783,284	+		PS417_22070	0.52	-1.0
4,783,285	-		PS417_22070	0.52	-0.9
4,783,285	-		PS417_22070	0.52	-0.5
4,783,288	+		PS417_22070	0.52	+2.2
4,783,288	+		PS417_22070	0.52	+0.1
4,783,289	-		PS417_22070	0.52	-0.1
4,783,289	-		PS417_22070	0.52	+0.6
4,783,293	+		PS417_22070	0.52	+1.3
4,783,455	+		PS417_22070	0.62	-0.3
4,783,456	-		PS417_22070	0.62	-2.0
4,783,456	-		PS417_22070	0.62	+0.3
4,783,770	+		PS417_22070	0.81	-0.5
4,783,841	+		PS417_22070	0.85	+0.0
4,783,841	+		PS417_22070	0.85	-1.9
4,783,941	+				+0.2
4,784,028	+				+0.9
4,784,029	-				-1.6
4,784,096	+				-0.2
4,784,111	-				-2.4
4,784,111	-				-0.0
4,784,136	+				-0.4
4,784,137	-				-0.8
4,784,142	+				-2.3
4,784,142	+				-0.0
4,784,217	+				-1.7
4,784,262	+				-0.6
4,784,263	-				+0.5
4,784,263	-				-1.0
4,784,271	+				+0.1
4,784,271	+				+0.7
4,784,271	+				+0.1
4,784,272	-				-3.0
4,784,273	+				-1.2
4,784,273	+				-0.4
4,784,273	+				+0.3
4,784,274	-				+0.5
4,784,355	-				-1.5
4,784,355	-				+0.9
4,784,471	+		PS417_22075	0.17	-1.0
4,784,478	+		PS417_22075	0.18	-1.5
4,784,478	+		PS417_22075	0.18	+0.4
4,784,478	+		PS417_22075	0.18	-0.7
4,784,478	+		PS417_22075	0.18	-1.0
4,784,479	-		PS417_22075	0.18	+0.8
4,784,479	-		PS417_22075	0.18	+1.9
4,784,479	-		PS417_22075	0.18	-0.1
4,784,480	+		PS417_22075	0.18	-0.2
4,784,481	-		PS417_22075	0.19	+0.1
4,784,654	+		PS417_22075	0.37	-1.2
4,784,654	+		PS417_22075	0.37	+0.2
4,784,654	+		PS417_22075	0.37	-1.0
4,784,655	-		PS417_22075	0.37	-0.4
4,784,655	-		PS417_22075	0.37	-0.5
4,784,655	-		PS417_22075	0.37	+0.1
4,784,655	-		PS417_22075	0.37	-0.3
4,784,670	-		PS417_22075	0.39	-0.7
4,784,906	+		PS417_22075	0.63	-0.8
4,784,906	+		PS417_22075	0.63	-0.7
4,784,907	-		PS417_22075	0.64	-1.7