Strain Fitness in Pseudomonas simiae WCS417 around PS417_22025

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,774,476	+		PS417_22020	0.44	-1.3
4,774,476	+		PS417_22020	0.44	+0.5
4,774,477	-		PS417_22020	0.44	-0.2
4,774,477	-		PS417_22020	0.44	-1.5
4,774,510	-		PS417_22020	0.46	-0.3
4,774,510	-		PS417_22020	0.46	+1.1
4,774,609	-		PS417_22020	0.54	+0.4
4,774,609	-		PS417_22020	0.54	-0.3
4,774,680	+		PS417_22020	0.59	+0.3
4,774,875	+		PS417_22020	0.74	+0.6
4,774,875	+		PS417_22020	0.74	-0.0
4,774,875	+		PS417_22020	0.74	-1.4
4,774,876	-		PS417_22020	0.74	+0.2
4,774,876	-		PS417_22020	0.74	-0.3
4,774,992	+		PS417_22020	0.83	-1.0
4,775,320	+				+0.6
4,775,320	+				+0.5
4,775,320	+				+0.5
4,775,320	+				-0.6
4,775,320	+				+0.3
4,775,321	-				-0.9
4,775,322	+				+0.5
4,775,323	-				-0.2
4,775,356	+				+0.4
4,775,673	+		PS417_22025	0.33	-1.0
4,775,883	-		PS417_22025	0.57	+1.3
4,776,014	+		PS417_22025	0.72	-0.5
4,776,261	-				-0.2
4,776,261	-				-1.0
4,776,360	+				-0.5
4,776,360	+				+0.1
4,776,361	-				+0.7
4,776,395	+				-0.9
4,776,395	+				-0.9
4,776,501	+		PS417_22030	0.25	-1.4
4,776,502	-		PS417_22030	0.25	-1.5
4,776,502	-		PS417_22030	0.25	-0.3
4,776,564	+		PS417_22030	0.35	+0.1
4,776,783	+		PS417_22030	0.71	-0.1
4,776,784	-		PS417_22030	0.71	-0.2
4,776,819	+		PS417_22030	0.77	+0.1
4,776,820	-		PS417_22030	0.77	+0.4
4,777,084	-				+0.0
4,777,122	+				-0.3
4,777,122	+				-2.4
4,777,122	+				+0.2
4,777,122	+				+0.7
4,777,122	+				-0.5
4,777,123	-				-1.1
4,777,123	-				+1.3
4,777,123	-				+0.3
4,777,134	+				+0.2
4,777,134	+				+0.1
4,777,135	-				+0.7
4,777,135	-				-1.9
4,777,141	+				+0.2
4,777,141	+				-1.3
4,777,142	-				-0.7
4,777,162	+				-3.4
4,777,163	-				+0.3
4,777,163	-				-1.6