Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02175 and PS417_02180 are separated by 460 nucleotides PS417_02180 and PS417_02185 are separated by 203 nucleotides
PS417_02175: PS417_02175 - transcriptional regulator, at 487,047 to 491,000
_02175
PS417_02180: PS417_02180 - proline:sodium symporter PutP, at 491,461 to 492,945
_02180
PS417_02185: PS417_02185 - type IV secretion protein Rhs, at 493,149 to 495,125
_02185
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.272 kb on + strand at 491.385 kb on + strand at 491.385 kb on + strand at 491.386 kb on - strand at 491.430 kb on + strand at 491.431 kb on - strand at 491.461 kb on - strand at 491.461 kb on - strand at 491.469 kb on + strand at 491.470 kb on - strand at 491.470 kb on - strand at 491.473 kb on - strand at 491.473 kb on - strand at 491.665 kb on + strand, within PS417_02180 at 491.665 kb on + strand, within PS417_02180 at 491.665 kb on + strand, within PS417_02180 at 491.666 kb on - strand, within PS417_02180 at 491.719 kb on + strand, within PS417_02180 at 491.797 kb on + strand, within PS417_02180 at 491.980 kb on + strand, within PS417_02180 at 492.026 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.895 kb on - strand at 492.944 kb on - strand at 492.944 kb on - strand at 493.026 kb on - strand at 493.178 kb on + strand at 493.217 kb on - strand at 493.470 kb on - strand, within PS417_02185 at 493.470 kb on - strand, within PS417_02185 at 493.737 kb on + strand, within PS417_02185 at 493.738 kb on - strand, within PS417_02185 at 493.739 kb on + strand, within PS417_02185 at 493.799 kb on - strand, within PS417_02185 at 493.834 kb on - strand, within PS417_02185
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 491,272 + +0.8 491,385 + +2.2 491,385 + -0.0 491,386 - -0.9 491,430 + +1.3 491,431 - +0.1 491,461 - +0.2 491,461 - +0.4 491,469 + +1.0 491,470 - +0.3 491,470 - +0.0 491,473 - -0.5 491,473 - -2.7 491,665 + PS417_02180 0.14 +0.5 491,665 + PS417_02180 0.14 +0.9 491,665 + PS417_02180 0.14 +0.1 491,666 - PS417_02180 0.14 +0.6 491,719 + PS417_02180 0.17 +1.3 491,797 + PS417_02180 0.23 +0.6 491,980 + PS417_02180 0.35 +0.1 492,026 + PS417_02180 0.38 +1.0 492,343 + PS417_02180 0.59 +0.3 492,343 + PS417_02180 0.59 +2.1 492,343 + PS417_02180 0.59 +1.3 492,895 - -0.1 492,944 - +0.9 492,944 - -0.4 493,026 - +0.7 493,178 + -0.2 493,217 - -0.1 493,470 - PS417_02185 0.16 +0.2 493,470 - PS417_02185 0.16 -0.6 493,737 + PS417_02185 0.30 +0.2 493,738 - PS417_02185 0.30 -0.8 493,739 + PS417_02185 0.30 +1.5 493,799 - PS417_02185 0.33 -0.3 493,834 - PS417_02185 0.35 -0.5
Or see this region's nucleotide sequence