Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21890 and PS417_21895 are separated by 102 nucleotides PS417_21895 and PS417_21900 are separated by 124 nucleotides
PS417_21890: PS417_21890 - magnesium transporter CorA, at 4,750,473 to 4,751,495
_21890
PS417_21895: PS417_21895 - nuclease PIN, at 4,751,598 to 4,753,214
_21895
PS417_21900: PS417_21900 - allophanate hydrolase, at 4,753,339 to 4,754,313
_21900
Position (kb) 4751
4752
4753
4754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4750.814 kb on + strand, within PS417_21890 at 4750.948 kb on + strand, within PS417_21890 at 4751.032 kb on + strand, within PS417_21890 at 4751.491 kb on - strand at 4751.529 kb on + strand at 4751.529 kb on + strand at 4751.529 kb on + strand at 4751.529 kb on + strand at 4751.529 kb on + strand at 4751.530 kb on - strand at 4751.530 kb on - strand at 4751.883 kb on + strand, within PS417_21895 at 4751.883 kb on + strand, within PS417_21895 at 4751.883 kb on + strand, within PS417_21895 at 4751.883 kb on + strand, within PS417_21895 at 4751.883 kb on + strand, within PS417_21895 at 4751.884 kb on - strand, within PS417_21895 at 4751.884 kb on - strand, within PS417_21895 at 4751.884 kb on - strand, within PS417_21895 at 4752.312 kb on + strand, within PS417_21895 at 4752.313 kb on - strand, within PS417_21895 at 4752.313 kb on - strand, within PS417_21895 at 4752.600 kb on + strand, within PS417_21895 at 4752.600 kb on + strand, within PS417_21895 at 4752.601 kb on - strand, within PS417_21895 at 4752.741 kb on + strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.742 kb on - strand, within PS417_21895 at 4752.972 kb on + strand, within PS417_21895 at 4752.972 kb on + strand, within PS417_21895 at 4752.973 kb on - strand, within PS417_21895 at 4752.973 kb on - strand, within PS417_21895 at 4753.032 kb on + strand, within PS417_21895 at 4753.032 kb on + strand, within PS417_21895 at 4753.032 kb on + strand, within PS417_21895 at 4753.032 kb on + strand at 4753.033 kb on - strand, within PS417_21895 at 4753.033 kb on - strand, within PS417_21895 at 4753.033 kb on - strand, within PS417_21895 at 4753.122 kb on - strand at 4753.922 kb on + strand, within PS417_21900 at 4753.922 kb on + strand, within PS417_21900 at 4753.923 kb on - strand, within PS417_21900 at 4753.980 kb on - strand, within PS417_21900 at 4753.980 kb on - strand, within PS417_21900 at 4754.210 kb on + strand, within PS417_21900
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 4,750,814 + PS417_21890 0.33 +0.1 4,750,948 + PS417_21890 0.46 +0.1 4,751,032 + PS417_21890 0.55 +0.3 4,751,491 - -0.2 4,751,529 + -0.0 4,751,529 + +0.2 4,751,529 + +0.3 4,751,529 + -0.3 4,751,529 + +0.9 4,751,530 - -0.1 4,751,530 - +0.6 4,751,883 + PS417_21895 0.18 +0.6 4,751,883 + PS417_21895 0.18 +0.2 4,751,883 + PS417_21895 0.18 +0.3 4,751,883 + PS417_21895 0.18 +1.7 4,751,883 + PS417_21895 0.18 +0.4 4,751,884 - PS417_21895 0.18 +1.6 4,751,884 - PS417_21895 0.18 -1.5 4,751,884 - PS417_21895 0.18 +0.5 4,752,312 + PS417_21895 0.44 +1.1 4,752,313 - PS417_21895 0.44 +0.3 4,752,313 - PS417_21895 0.44 +0.8 4,752,600 + PS417_21895 0.62 +0.1 4,752,600 + PS417_21895 0.62 +0.1 4,752,601 - PS417_21895 0.62 +0.5 4,752,741 + PS417_21895 0.71 -2.4 4,752,742 - PS417_21895 0.71 -1.3 4,752,742 - PS417_21895 0.71 +1.4 4,752,742 - PS417_21895 0.71 +0.9 4,752,742 - PS417_21895 0.71 -1.3 4,752,742 - PS417_21895 0.71 +5.0 4,752,972 + PS417_21895 0.85 -0.3 4,752,972 + PS417_21895 0.85 -1.3 4,752,973 - PS417_21895 0.85 +0.3 4,752,973 - PS417_21895 0.85 -1.6 4,753,032 + PS417_21895 0.89 -0.0 4,753,032 + PS417_21895 0.89 -3.2 4,753,032 + PS417_21895 0.89 +0.6 4,753,032 + +1.3 4,753,033 - PS417_21895 0.89 -0.8 4,753,033 - PS417_21895 0.89 -0.3 4,753,033 - PS417_21895 0.89 -2.6 4,753,122 - +1.9 4,753,922 + PS417_21900 0.60 +1.4 4,753,922 + PS417_21900 0.60 -0.5 4,753,923 - PS417_21900 0.60 +0.5 4,753,980 - PS417_21900 0.66 -1.0 4,753,980 - PS417_21900 0.66 +0.3 4,754,210 + PS417_21900 0.89 +0.4
Or see this region's nucleotide sequence