Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21435 and PS417_21440 are separated by 191 nucleotides PS417_21440 and PS417_21445 are separated by 24 nucleotides PS417_21445 and PS417_21450 are separated by 126 nucleotides
PS417_21435: PS417_21435 - acyl carrier protein, at 4,654,930 to 4,655,166
_21435
PS417_21440: PS417_21440 - 3-ketoacyl-ACP reductase, at 4,655,358 to 4,656,101
_21440
PS417_21445: PS417_21445 - malonyl CoA-ACP transacylase, at 4,656,126 to 4,657,064
_21445
PS417_21450: PS417_21450 - phosphate acyltransferase, at 4,657,191 to 4,658,171
_21450
Position (kb)
4656
4657
4658 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4655.221 kb on - strand at 4655.221 kb on - strand at 4655.223 kb on - strand at 4655.286 kb on - strand at 4655.291 kb on - strand at 4655.291 kb on - strand at 4655.327 kb on - strand at 4655.360 kb on - strand at 4655.369 kb on - strand at 4655.369 kb on - strand at 4655.369 kb on - strand at 4655.369 kb on - strand at 4655.369 kb on - strand at 4657.168 kb on + strand at 4657.168 kb on + strand at 4657.169 kb on - strand at 4657.169 kb on - strand at 4657.169 kb on - strand at 4657.576 kb on + strand, within PS417_21450 at 4657.880 kb on + strand, within PS417_21450
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 4,655,221 - +0.6 4,655,221 - +0.3 4,655,223 - +2.9 4,655,286 - +1.1 4,655,291 - +1.0 4,655,291 - +1.6 4,655,327 - +0.6 4,655,360 - +1.4 4,655,369 - +3.2 4,655,369 - +4.2 4,655,369 - +3.1 4,655,369 - +2.7 4,655,369 - +2.7 4,657,168 + +1.4 4,657,168 + +0.8 4,657,169 - +2.5 4,657,169 - +0.0 4,657,169 - +0.0 4,657,576 + PS417_21450 0.39 +1.2 4,657,880 + PS417_21450 0.70 -0.8
Or see this region's nucleotide sequence