Strain Fitness in Pseudomonas simiae WCS417 around PS417_21340

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,637,586	+				+1.2
4,637,925	+				-0.4
4,637,925	+		PS417_21335	0.52	+0.3
4,637,925	+		PS417_21335	0.52	+0.2
4,637,925	+		PS417_21335	0.52	-0.6
4,637,926	-		PS417_21335	0.52	-0.5
4,637,926	-		PS417_21335	0.52	-0.7
4,637,926	-		PS417_21335	0.52	+0.4
4,637,926	-		PS417_21335	0.52	-1.8
4,638,018	+		PS417_21335	0.62	+0.6
4,638,377	+				-2.4
4,638,428	+				-0.1
4,638,437	+				-0.1
4,638,642	-		PS417_21340	0.26	-0.7
4,638,943	+		PS417_21340	0.63	-1.8
4,638,944	-		PS417_21340	0.63	+0.1
4,638,944	-		PS417_21340	0.63	-0.1
4,638,944	-		PS417_21340	0.63	+0.2
4,638,944	-		PS417_21340	0.63	-1.5
4,638,944	-		PS417_21340	0.63	+0.2
4,639,028	+		PS417_21340	0.73	-0.4
4,639,029	-		PS417_21340	0.73	-0.4
4,639,202	+				-0.4
4,639,202	+				+1.0
4,639,203	-				-0.3
4,639,295	+				+0.5
4,639,298	-				+0.3
4,639,298	-				-1.7
4,639,324	-				+0.0
4,639,327	+				+0.0
4,639,345	-				-0.0
4,639,366	-				+0.7
4,639,737	-		PS417_21345	0.46	-0.5
4,639,738	+		PS417_21345	0.46	+0.0
4,639,738	+		PS417_21345	0.46	-0.3
4,639,738	+		PS417_21345	0.46	-0.1
4,639,784	-		PS417_21345	0.55	+0.8
4,639,922	-		PS417_21345	0.84	-1.0
4,640,028	+				+0.0
4,640,028	+				-0.2
4,640,029	-				+1.9
4,640,029	-				-0.4
4,640,029	-				+0.2
4,640,029	-				-0.4
4,640,029	-				+1.9
4,640,029	-				+1.0
4,640,029	-				-0.6
4,640,029	-				+0.9
4,640,029	-				+0.1
4,640,029	-				-0.6
4,640,031	+				-0.4
4,640,031	+				-0.5
4,640,031	+				+0.5
4,640,031	+				-0.1
4,640,151	+				+0.2
4,640,154	+				+0.1
4,640,154	+				-0.4
4,640,155	-				+0.4
4,640,155	-				+1.2
4,640,158	+				+0.0
4,640,159	-				-0.1
4,640,167	+				-0.8
4,640,174	-				-0.0