Strain Fitness in Pseudomonas simiae WCS417 around PS417_20675

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,493,335	-		PS417_20670	0.70	+5.9
4,493,384	+		PS417_20670	0.75	+4.0
4,493,418	+		PS417_20670	0.78	+4.6
4,493,541	+				+3.7
4,493,542	-				+4.0
4,493,542	-				+3.4
4,493,542	-				+4.4
4,493,542	-				+0.2
4,493,545	+				+2.9
4,493,545	+				+4.1
4,493,546	-				+2.8
4,493,605	+				+3.5
4,493,606	-				-0.4
4,493,614	+				+4.2
4,493,615	-				+2.8
4,493,617	+				+3.7
4,493,618	-				+2.3
4,493,618	-				+0.2
4,493,618	-				+4.4
4,493,620	+				+3.8
4,493,630	+				+3.8
4,493,697	-				-2.2
4,493,706	-				-0.8
4,493,718	+				+2.8
4,493,719	-				-0.2
4,493,729	-				-1.6
4,493,750	+				+0.7
4,493,835	-				-2.5
4,493,849	+				+0.0
4,493,850	-				-2.7
4,493,865	-				-2.4
4,493,867	+				-0.6
4,493,868	-				-3.2
4,493,905	+				-0.6
4,493,908	-				-3.1
4,493,967	-				-1.2
4,493,967	-				-2.2
4,494,041	+				-1.8
4,494,042	-				+1.7
4,494,042	-				-0.6
4,494,044	-				-0.7
4,494,045	+				-0.2
4,494,045	+				+0.7
4,494,046	-				-0.3
4,494,046	-				-1.9
4,494,074	-				-0.5
4,494,128	-				-0.6
4,494,245	-				-0.8
4,494,245	-				-0.3
4,494,274	-				-0.6
4,494,285	+				+1.3
4,494,286	-				+1.9
4,494,293	-				-0.6
4,494,293	-				-1.1
4,494,377	+		PS417_20675	0.11	+0.1
4,494,378	-		PS417_20675	0.11	+0.7
4,494,387	+		PS417_20675	0.12	-0.5
4,494,387	+		PS417_20675	0.12	-0.4
4,494,387	+		PS417_20675	0.12	-1.2
4,494,388	-		PS417_20675	0.12	+0.5
4,494,388	-		PS417_20675	0.12	-1.3
4,494,388	-		PS417_20675	0.12	-0.4
4,494,633	+		PS417_20675	0.30	-0.1
4,494,633	+		PS417_20675	0.30	+0.8
4,494,756	+		PS417_20675	0.39	+1.2
4,494,756	+		PS417_20675	0.39	-0.8
4,494,756	+		PS417_20675	0.39	+0.4
4,494,756	+		PS417_20675	0.39	+1.3
4,494,756	+		PS417_20675	0.39	-0.2
4,494,756	+		PS417_20675	0.39	-0.4
4,494,756	+		PS417_20675	0.39	-0.8
4,494,756	+		PS417_20675	0.39	+0.8
4,494,756	+		PS417_20675	0.39	-0.0
4,494,756	+		PS417_20675	0.39	+1.2
4,494,756	+		PS417_20675	0.39	+1.3
4,494,756	+		PS417_20675	0.39	+0.9
4,494,756	+		PS417_20675	0.39	+0.3
4,494,756	+		PS417_20675	0.39	-0.0
4,494,757	-		PS417_20675	0.39	+0.2
4,494,757	-		PS417_20675	0.39	+1.4
4,494,757	-		PS417_20675	0.39	-0.6
4,494,757	-				-1.2
4,494,757	-		PS417_20675	0.39	+0.6
4,494,757	-		PS417_20675	0.39	-1.4
4,494,757	-		PS417_20675	0.39	-0.3
4,494,757	-		PS417_20675	0.39	+1.7
4,494,757	-		PS417_20675	0.39	-2.1
4,494,757	-		PS417_20675	0.39	-0.6
4,494,757	-		PS417_20675	0.39	+1.6
4,494,757	-		PS417_20675	0.39	+0.9
4,494,757	-		PS417_20675	0.39	+0.5
4,494,757	-		PS417_20675	0.39	+0.6
4,494,887	+		PS417_20675	0.48	+0.7
4,494,950	+		PS417_20675	0.52	+0.2
4,494,950	+		PS417_20675	0.52	+0.2
4,494,951	-		PS417_20675	0.53	+0.3
4,494,951	-		PS417_20675	0.53	-2.4
4,494,951	-		PS417_20675	0.53	+1.5
4,495,043	-		PS417_20675	0.59	+0.8
4,495,098	+		PS417_20675	0.63	-1.2
4,495,098	+		PS417_20675	0.63	+0.4
4,495,098	+		PS417_20675	0.63	+0.1
4,495,098	+		PS417_20675	0.63	+1.2
4,495,099	-		PS417_20675	0.63	+1.1
4,495,099	-		PS417_20675	0.63	+0.1
4,495,099	-		PS417_20675	0.63	-1.2
4,495,099	-		PS417_20675	0.63	-1.6
4,495,099	-		PS417_20675	0.63	+0.5
4,495,287	+		PS417_20675	0.77	+0.2
4,495,287	+		PS417_20675	0.77	+0.7
4,495,287	+		PS417_20675	0.77	-1.4
4,495,288	-		PS417_20675	0.77	+0.7
4,495,351	+		PS417_20675	0.81	+0.7
4,495,351	+		PS417_20675	0.81	+0.3
4,495,351	+		PS417_20675	0.81	+1.1
4,495,352	-		PS417_20675	0.81	+0.8
4,495,476	+				+0.6
4,495,509	-				+0.1
4,495,511	+				+0.5
4,495,511	+				+0.4
4,495,512	-				+1.5
4,495,512	-				+1.3
4,495,566	+				+0.8
4,495,574	+				+0.6
4,495,755	-		PS417_20680	0.11	+0.7
4,495,755	-		PS417_20680	0.11	-2.7
4,495,755	-		PS417_20680	0.11	+0.3
4,495,844	-		PS417_20680	0.21	+0.8
4,495,844	-		PS417_20680	0.21	+0.7
4,495,893	-		PS417_20680	0.27	+2.0
4,495,907	+		PS417_20680	0.28	+0.1
4,495,907	+		PS417_20680	0.28	-0.7
4,495,908	-		PS417_20680	0.28	+0.1
4,495,939	+		PS417_20680	0.32	+0.0
4,495,940	-		PS417_20680	0.32	-0.5
4,495,967	+		PS417_20680	0.35	+0.9
4,496,102	+		PS417_20680	0.51	+0.8
4,496,102	+		PS417_20680	0.51	+0.3
4,496,102	+		PS417_20680	0.51	+1.0
4,496,102	+		PS417_20680	0.51	+1.9
4,496,102	+		PS417_20680	0.51	+0.7
4,496,103	-		PS417_20680	0.51	+0.7
4,496,103	-		PS417_20680	0.51	+1.2
4,496,103	-		PS417_20680	0.51	-0.1
4,496,103	-		PS417_20680	0.51	+0.6
4,496,103	-		PS417_20680	0.51	+0.7
4,496,103	-		PS417_20680	0.51	+0.1
4,496,155	+		PS417_20680	0.57	+1.0
4,496,201	-		PS417_20680	0.62	+1.6
4,496,201	-		PS417_20680	0.62	-1.4
4,496,307	-		PS417_20680	0.75	-0.4
4,496,353	+		PS417_20680	0.80	+0.1
4,496,354	-		PS417_20680	0.80	+1.6
4,496,527	+				-0.4
4,496,536	+				+0.8
4,496,536	+				-0.8