Strain Fitness in Pseudomonas simiae WCS417 around PS417_20325

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,412,056	+				+0.3
4,412,083	+				-0.9
4,412,083	+				+0.4
4,412,084	-				+2.5
4,412,084	-				+2.9
4,412,087	+				+0.5
4,412,087	+				-0.4
4,412,088	-				-0.5
4,412,088	-				-2.6
4,412,314	+				-0.9
4,412,314	+				-0.1
4,412,314	+				-1.5
4,412,377	+		PS417_20320	0.11	-2.1
4,412,377	+		PS417_20320	0.11	-2.6
4,413,002	-				-0.1
4,413,011	+				-0.2
4,413,012	-				+0.4
4,413,063	+				+0.7
4,413,064	-				-0.5
4,413,195	+		PS417_20325	0.13	-1.6
4,413,380	+		PS417_20325	0.31	-2.7
4,413,381	-		PS417_20325	0.31	-0.1
4,413,549	+		PS417_20325	0.46	+0.2
4,413,550	-		PS417_20325	0.46	-1.2
4,413,550	-		PS417_20325	0.46	-3.5
4,413,551	+		PS417_20325	0.46	-1.4
4,413,551	+		PS417_20325	0.46	-1.5
4,413,551	+		PS417_20325	0.46	-0.2
4,413,552	-		PS417_20325	0.46	-0.1
4,413,552	-		PS417_20325	0.46	-0.0
4,413,627	+		PS417_20325	0.53	+0.1
4,413,627	+				+0.8
4,413,628	-		PS417_20325	0.53	-0.9
4,413,657	-		PS417_20325	0.56	-1.4
4,413,657	-		PS417_20325	0.56	+0.6
4,413,674	+		PS417_20325	0.58	-2.5
4,413,675	-		PS417_20325	0.58	-0.9
4,413,754	+		PS417_20325	0.65	-0.9
4,413,794	-		PS417_20325	0.69	-0.5
4,413,794	-				-1.2
4,413,813	-		PS417_20325	0.71	-1.3
4,413,873	+		PS417_20325	0.76	+0.1
4,414,101	+				+1.1
4,414,335	+		PS417_20330	0.56	+0.9
4,414,519	+				-0.2
4,414,547	+				+0.9
4,414,563	+				+0.0
4,414,564	-				-2.6
4,414,564	-				-2.5
4,414,719	+				+1.2
4,414,720	-				-0.0
4,414,807	+				-1.8
4,414,808	-				-0.9
4,414,825	+				+0.0
4,414,825	+				-1.5
4,414,826	-				-1.1
4,414,826	-				+0.9
4,414,826	-				+1.1
4,414,834	+				-0.9
4,414,834	+				-0.2
4,414,834	+				-0.5
4,414,834	+				+0.7
4,414,835	-				+1.2
4,414,892	-				+2.3
4,414,892	-				+1.3
4,414,963	+				-0.5
4,414,963	+		PS417_20335	0.18	-2.0
4,414,964	-		PS417_20335	0.18	-0.9
4,415,029	+		PS417_20335	0.26	+2.7
4,415,029	+		PS417_20335	0.26	+0.6
4,415,030	-		PS417_20335	0.26	-0.5
4,415,030	-		PS417_20335	0.26	+1.0
4,415,113	+		PS417_20335	0.36	+0.2
4,415,113	+		PS417_20335	0.36	-1.1
4,415,119	+		PS417_20335	0.37	-0.9