Strain Fitness in Pseudomonas simiae WCS417 around PS417_20195

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,386,903	+		PS417_20190	0.47	-1.1
4,386,903	+		PS417_20190	0.47	+1.1
4,386,903	+		PS417_20190	0.47	-1.7
4,386,904	-		PS417_20190	0.47	-0.2
4,386,928	+		PS417_20190	0.49	-0.2
4,387,029	+		PS417_20190	0.56	-0.2
4,387,047	+		PS417_20190	0.57	-2.2
4,387,047	+		PS417_20190	0.57	+0.2
4,387,047	+		PS417_20190	0.57	+0.5
4,387,047	+		PS417_20190	0.57	-1.2
4,387,047	+		PS417_20190	0.57	-0.1
4,387,048	-		PS417_20190	0.57	+0.1
4,387,048	-		PS417_20190	0.57	-0.8
4,387,048	-		PS417_20190	0.57	-0.5
4,387,048	-		PS417_20190	0.57	-0.7
4,387,136	+		PS417_20190	0.63	+0.1
4,387,137	-		PS417_20190	0.63	-0.1
4,387,147	-		PS417_20190	0.63	-0.9
4,387,365	+		PS417_20190	0.78	+2.9
4,387,365	+		PS417_20190	0.78	-1.0
4,387,366	-		PS417_20190	0.78	-0.5
4,387,366	-		PS417_20190	0.78	-0.5
4,387,549	+				-0.9
4,387,549	+				-0.9
4,387,550	-				-1.0
4,387,550	-				-1.7
4,387,550	-				-0.2
4,387,550	-				+1.7
4,387,587	+				+0.2
4,387,587	+				-0.4
4,387,587	+				-0.4
4,387,587	+				+0.5
4,387,748	+				+0.2
4,387,758	-				-3.2
4,387,793	-				-2.5
4,387,828	+				+0.9
4,387,829	-				+2.4
4,387,829	-				-1.4
4,387,829	-				-0.1
4,387,864	+				+0.7
4,387,864	+				-0.3
4,387,864	+				-0.1
4,387,864	+				-1.3
4,387,864	+				-0.5
4,387,864	+				+1.0
4,387,864	+				-0.5
4,387,865	-				+0.7
4,387,865	-				+0.6
4,387,865	-				-0.1
4,387,865	-				+0.4
4,387,890	-		PS417_20195	0.11	-1.7
4,387,930	+		PS417_20195	0.14	-0.5
4,387,930	+		PS417_20195	0.14	-0.2
4,387,930	+		PS417_20195	0.14	-1.5
4,387,930	+		PS417_20195	0.14	+0.1
4,387,931	-		PS417_20195	0.14	+0.4
4,387,934	+		PS417_20195	0.14	-0.3
4,387,934	+		PS417_20195	0.14	-0.1
4,387,934	+		PS417_20195	0.14	+0.2
4,387,934	+		PS417_20195	0.14	+0.3
4,387,934	+		PS417_20195	0.14	+0.4
4,387,934	+		PS417_20195	0.14	-1.1
4,387,934	+		PS417_20195	0.14	+0.9
4,387,934	+		PS417_20195	0.14	-2.2
4,387,934	+		PS417_20195	0.14	-2.2
4,387,934	+		PS417_20195	0.14	+0.1
4,387,934	+		PS417_20195	0.14	-0.5
4,387,934	+		PS417_20195	0.14	+0.2
4,387,935	-		PS417_20195	0.14	-1.3
4,387,935	-		PS417_20195	0.14	-1.2
4,387,935	-		PS417_20195	0.14	+0.1
4,387,935	-		PS417_20195	0.14	-0.8
4,387,935	-		PS417_20195	0.14	-0.2
4,387,935	-		PS417_20195	0.14	-0.3
4,387,935	-		PS417_20195	0.14	-0.9
4,387,935	-		PS417_20195	0.14	-0.4
4,388,063	-		PS417_20195	0.24	-1.2
4,388,221	+		PS417_20195	0.35	-0.4
4,388,222	-				-0.9
4,388,414	-		PS417_20195	0.49	-0.5
4,388,414	-		PS417_20195	0.49	-0.3
4,388,425	+		PS417_20195	0.50	-1.3
4,388,425	+		PS417_20195	0.50	-2.3
4,388,425	+		PS417_20195	0.50	-1.2
4,388,425	+		PS417_20195	0.50	-1.9
4,388,426	-		PS417_20195	0.50	-1.0
4,388,426	-		PS417_20195	0.50	+0.3
4,388,426	-		PS417_20195	0.50	+0.1
4,388,426	-		PS417_20195	0.50	+0.3
4,388,426	-		PS417_20195	0.50	-0.0
4,388,500	+				+1.1
4,388,524	+		PS417_20195	0.57	-0.8
4,388,524	+		PS417_20195	0.57	+0.1
4,388,524	+		PS417_20195	0.57	-0.0
4,388,525	-		PS417_20195	0.57	+0.1
4,388,525	-		PS417_20195	0.57	-2.2
4,388,525	-		PS417_20195	0.57	+1.6
4,388,726	+		PS417_20195	0.72	-0.3
4,388,873	-		PS417_20195	0.82	+1.5
4,389,028	+				-0.2
4,389,028	+				+0.7
4,389,029	-				+0.3
4,389,029	-				+0.2
4,389,289	+				-0.1
4,389,290	-				+0.1
4,389,328	-				+0.1
4,389,398	-				+0.5
4,389,538	-				+1.7
4,389,538	-				-0.1
4,389,547	-				+1.1
4,389,580	+				+0.5
4,389,580	+				-2.8
4,389,580	+				-0.5
4,389,581	-				+0.3
4,389,581	-				+0.8
4,389,583	+				+0.3
4,389,584	-				+1.4
4,389,590	-				+0.0
4,389,600	+				+0.4
4,389,600	+				+1.1
4,389,600	+				-2.3
4,389,600	+				-0.6
4,389,601	-				+2.1
4,389,601	-				-0.4
4,389,627	+				-0.5
4,389,628	-				-0.2
4,389,747	+				-1.6
4,389,902	+		PS417_20205	0.27	+0.1