Strain Fitness in Pseudomonas simiae WCS417 around PS417_19855

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,309,548	+		PS417_19850	0.50	-1.2
4,309,590	+		PS417_19850	0.53	-1.8
4,309,591	-		PS417_19850	0.53	+0.3
4,309,591	-		PS417_19850	0.53	-0.5
4,309,641	+		PS417_19850	0.57	-2.8
4,309,709	+		PS417_19850	0.62	-1.2
4,309,906	+		PS417_19850	0.76	-1.2
4,309,907	-		PS417_19850	0.76	-3.6
4,309,926	-		PS417_19850	0.77	-0.0
4,310,238	+				-0.6
4,310,239	-				-0.7
4,310,322	+				+1.6
4,310,322	+				-0.7
4,310,322	+				-1.2
4,310,322	+				-1.4
4,310,323	-				-0.0
4,310,326	+				-1.2
4,310,327	-				-0.8
4,310,327	-				-2.8
4,310,327	-				-1.5
4,310,327	-				-0.6
4,310,330	-				+0.9
4,310,330	-				-1.2
4,310,330	-				-0.8
4,310,330	-				-1.3
4,310,508	+				-0.6
4,310,509	-				+1.0
4,311,121	-		PS417_19855	0.65	+1.7
4,311,392	+				-1.7
4,311,392	+				-0.4
4,311,397	-				-1.6
4,311,464	+				-0.8
4,311,465	-				-0.0
4,311,573	+				-1.1
4,311,573	+				-1.0
4,311,584	+				-0.9
4,311,585	-				+1.9
4,311,585	-				+1.3
4,311,589	+				-1.1
4,311,607	+				-0.8
4,311,608	-				+1.1
4,311,608	-				+2.6
4,311,662	-				+0.6
4,311,716	-				+1.4
4,311,725	+				+1.1
4,311,725	+				+0.5
4,311,725	+				-2.2
4,311,725	+				-0.2
4,311,726	-				+1.7
4,311,726	-				+0.6
4,311,900	+		PS417_19860	0.11	-0.2
4,312,024	-		PS417_19860	0.19	-0.5
4,312,135	-		PS417_19860	0.26	-1.3
4,312,197	+		PS417_19860	0.29	+1.1
4,312,198	-		PS417_19860	0.30	-1.3
4,312,198	-		PS417_19860	0.30	+0.6
4,312,209	+		PS417_19860	0.30	-1.4
4,312,209	+		PS417_19860	0.30	-2.0
4,312,235	+				+1.1
4,312,236	-		PS417_19860	0.32	-0.3
4,312,236	-				+0.1
4,312,304	+		PS417_19860	0.36	-0.2
4,312,305	-		PS417_19860	0.36	-0.2
4,312,365	+		PS417_19860	0.40	-1.4
4,312,405	-		PS417_19860	0.42	+0.8