Strain Fitness in Pseudomonas simiae WCS417 around PS417_19405

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,203,618	+		PS417_19395	0.80	-1.3
4,203,643	-		PS417_19395	0.82	+0.6
4,203,643	-		PS417_19395	0.82	+1.1
4,203,677	+		PS417_19395	0.85	-0.6
4,203,728	+		PS417_19395	0.89	+0.9
4,203,729	-		PS417_19395	0.89	+0.3
4,203,776	+				-1.2
4,203,776	+				-1.0
4,203,783	+				+0.9
4,203,783	+				-1.1
4,203,783	+				+0.0
4,203,783	+				+0.1
4,203,783	+				-0.2
4,203,784	-				+0.1
4,203,784	-				+0.5
4,203,784	-				-2.1
4,203,784	-				+0.2
4,203,784	-				-1.4
4,203,814	-				+1.1
4,203,871	+				+3.1
4,203,872	-				-0.5
4,203,878	-				+3.1
4,203,994	+		PS417_19400	0.16	-1.2
4,203,994	+		PS417_19400	0.16	-0.1
4,203,995	-		PS417_19400	0.16	+0.3
4,203,995	-		PS417_19400	0.16	-1.6
4,203,995	-				-0.5
4,204,138	+		PS417_19400	0.38	-1.2
4,204,138	+		PS417_19400	0.38	-0.7
4,204,139	-		PS417_19400	0.38	+0.3
4,204,256	+		PS417_19400	0.57	+0.0
4,204,571	-				-0.8
4,204,571	-				-0.9
4,204,714	+				+0.5
4,204,714	+				-1.1
4,204,715	-				+0.4
4,204,715	-				-2.4
4,204,722	+				+0.5
4,204,740	-				+0.4
4,204,743	+				+0.1
4,204,744	-				+0.6
4,204,747	-				+1.2
4,204,793	+				-2.1
4,204,794	-				+0.3
4,204,794	-				-0.7
4,204,794	-				-0.9
4,204,794	-				+0.2
4,204,799	+				+0.3
4,204,799	+				+1.1
4,204,800	-				-0.6
4,204,814	+				+0.2
4,204,814	+				+0.3
4,204,815	-				-0.6
4,204,815	-				-0.3
4,204,815	-				+0.6
4,204,987	+				-0.3
4,204,992	+				+1.5
4,204,992	+				+0.9
4,204,992	+				+0.7
4,204,992	+				-0.8
4,204,993	-				+1.9
4,204,993	-				-1.2
4,204,993	-				+2.3
4,204,993	-				-0.6
4,204,993	-				-0.1
4,204,993	-				-1.2
4,204,993	-				-0.7
4,204,993	-				-1.5
4,204,993	-				+0.1
4,205,272	+		PS417_19405	0.14	-1.9
4,205,273	-		PS417_19405	0.14	-0.9
4,205,301	-		PS417_19405	0.15	+0.4
4,205,418	+		PS417_19405	0.17	+0.8
4,205,418	+		PS417_19405	0.17	-0.4
4,205,418	+		PS417_19405	0.17	+0.1
4,205,421	+		PS417_19405	0.17	-0.9
4,205,475	+				+1.1
4,205,475	+		PS417_19405	0.18	+0.3
4,205,476	-		PS417_19405	0.18	-0.2
4,206,027	-		PS417_19405	0.29	-1.8
4,206,255	-		PS417_19405	0.33	-1.6
4,206,262	+		PS417_19405	0.33	-0.6
4,206,521	+		PS417_19405	0.38	+0.5
4,206,522	-		PS417_19405	0.38	-0.5
4,206,734	+		PS417_19405	0.42	-0.7
4,206,734	+		PS417_19405	0.42	-0.4
4,206,816	+				+2.1
4,206,858	+		PS417_19405	0.45	+0.7
4,206,859	-		PS417_19405	0.45	-0.5
4,207,011	-		PS417_19405	0.48	-0.3
4,207,090	-		PS417_19405	0.49	+0.7
4,207,280	+		PS417_19405	0.53	-0.2
4,207,280	+		PS417_19405	0.53	-0.5
4,207,280	+		PS417_19405	0.53	-0.7
4,207,280	+		PS417_19405	0.53	-2.7
4,207,280	+				+1.1
4,207,281	-		PS417_19405	0.53	+0.9
4,207,332	+		PS417_19405	0.54	-0.2
4,207,333	-		PS417_19405	0.54	-0.2
4,207,349	-		PS417_19405	0.54	+0.8
4,207,354	+		PS417_19405	0.54	-0.7
4,207,387	+		PS417_19405	0.55	-0.7
4,207,388	-		PS417_19405	0.55	+2.7
4,207,388	-		PS417_19405	0.55	-0.0
4,207,388	-		PS417_19405	0.55	+0.9
4,207,432	+		PS417_19405	0.56	+0.9
4,207,433	-		PS417_19405	0.56	-1.5
4,207,433	-		PS417_19405	0.56	-0.6
4,207,433	-		PS417_19405	0.56	-0.3
4,207,433	-		PS417_19405	0.56	+0.1
4,207,435	-		PS417_19405	0.56	-1.7
4,207,435	-		PS417_19405	0.56	-1.1
4,207,435	-		PS417_19405	0.56	-0.5
4,207,453	-		PS417_19405	0.56	-1.0
4,207,453	-		PS417_19405	0.56	+0.3
4,207,476	+		PS417_19405	0.57	-1.2
4,207,476	+		PS417_19405	0.57	-0.4
4,207,477	-		PS417_19405	0.57	-0.6
4,207,477	-		PS417_19405	0.57	+2.1
4,207,480	+		PS417_19405	0.57	+1.0
4,207,480	+		PS417_19405	0.57	+0.5
4,207,481	-		PS417_19405	0.57	+1.1
4,207,481	-		PS417_19405	0.57	-1.6
4,207,540	-		PS417_19405	0.58	-0.0
4,207,714	+		PS417_19405	0.61	-0.3
4,207,714	+		PS417_19405	0.61	-0.3
4,207,715	-		PS417_19405	0.61	+1.0
4,207,715	-		PS417_19405	0.61	-1.7
4,207,715	-		PS417_19405	0.61	+0.7
4,207,804	-		PS417_19405	0.63	-0.2
4,207,913	+		PS417_19405	0.65	-0.4
4,207,978	-		PS417_19405	0.66	-1.0
4,208,044	+		PS417_19405	0.67	-0.4
4,208,044	+		PS417_19405	0.67	+0.8
4,208,045	-		PS417_19405	0.67	-0.1
4,208,260	+		PS417_19405	0.71	+0.4
4,208,510	+		PS417_19405	0.76	-0.9
4,208,511	-				-0.5
4,208,615	-		PS417_19405	0.78	-0.3
4,208,800	+		PS417_19405	0.82	-0.1
4,208,800	+		PS417_19405	0.82	-0.5
4,208,800	+		PS417_19405	0.82	-1.9
4,208,801	-		PS417_19405	0.82	-1.6
4,208,801	-		PS417_19405	0.82	+0.2
4,208,949	+		PS417_19405	0.85	-0.0
4,208,949	+		PS417_19405	0.85	+0.2
4,208,950	-		PS417_19405	0.85	+0.6
4,208,950	-		PS417_19405	0.85	-0.2
4,208,994	+		PS417_19405	0.86	-1.6
4,208,995	-		PS417_19405	0.86	-1.3
4,209,330	+				-0.3
4,209,592	+				-2.2
4,209,679	+				+1.5
4,209,686	+				-0.5
4,209,787	-				+0.2
4,209,813	+				-2.1
4,209,813	+				+0.1
4,209,813	+				-0.7
4,209,814	-				-0.1
4,209,814	-				+0.4
4,209,817	+				+0.1
4,209,817	+				-0.6
4,209,817	+				+0.9
4,209,817	+				+0.0
4,209,817	+				-0.1
4,209,818	-				+1.0
4,209,818	-				-0.3
4,209,818	-				-0.6
4,209,821	+				-0.3
4,209,920	-				+0.7
4,209,928	+				-0.0
4,209,929	-				+0.0
4,210,286	+				-0.2
4,210,612	-				-0.2