Strain Fitness in Pseudomonas simiae WCS417 around PS417_19280

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
4,181,825	+				+1.1
4,181,825	+				-0.2
4,181,907	+		PS417_19270	0.34	-0.4
4,181,962	-		PS417_19270	0.63	-1.4
4,181,962	-		PS417_19270	0.63	-1.4
4,182,044	+				+0.5
4,182,065	+				+2.7
4,182,065	+				+0.3
4,182,066	-				-0.9
4,182,066	-				-0.2
4,182,244	+		PS417_19275	0.27	-2.9
4,182,256	-		PS417_19275	0.29	+0.8
4,182,689	+				+0.5
4,182,689	+				-0.2
4,182,690	-				+0.3
4,182,690	-				+0.3
4,182,690	-				-0.3
4,182,690	-				+0.2
4,182,765	+				-0.4
4,182,781	-				+0.1
4,182,781	-				+0.3
4,182,784	+				-2.1
4,182,784	+				+0.4
4,182,785	-				-2.5
4,182,785	-				-0.5
4,182,785	-				+0.0
4,182,785	-				-2.3
4,182,785	-				+0.1
4,182,785	-				+0.7
4,182,812	-				+1.7
4,182,838	-				-0.9
4,182,838	-				-1.5
4,182,838	-				+0.7
4,182,839	+				+0.5
4,182,849	+				-0.8
4,182,849	+				+0.8
4,182,850	-				-0.2
4,182,850	-				-3.0
4,182,977	-		PS417_19280	0.26	-0.9
4,182,991	-		PS417_19280	0.28	-1.6
4,183,045	+		PS417_19280	0.37	+0.5
4,183,046	-		PS417_19280	0.37	-1.3
4,183,099	-		PS417_19280	0.46	-0.1
4,183,125	+		PS417_19280	0.51	-1.3
4,183,141	+		PS417_19280	0.53	-2.6
4,183,184	-		PS417_19280	0.60	-1.3
4,183,276	-		PS417_19280	0.76	-1.5
4,183,323	-		PS417_19280	0.84	+0.8
4,183,350	+		PS417_19280	0.88	-0.4
4,183,351	-		PS417_19280	0.89	+1.3
4,183,384	+				-0.8
4,183,395	+				-0.3
4,183,395	+				-0.8
4,183,395	+				+0.6
4,183,395	+				-0.6
4,183,396	-				+0.4
4,183,396	-				-0.1
4,183,396	-				-0.5
4,183,396	-				+0.9
4,183,412	-				+0.2
4,183,416	+				+0.7
4,183,442	+				+0.2
4,183,559	+		PS417_19285	0.23	+0.1
4,183,762	+		PS417_19285	0.62	+0.1
4,183,980	+				-0.0
4,183,980	+				+0.1
4,183,980	+				+0.2
4,183,980	+				+0.4
4,183,980	+				+0.2
4,183,981	-				+0.5
4,183,981	-				-1.6
4,183,981	-				+0.1
4,183,981	-				-1.6
4,183,981	-				+0.3
4,183,981	-				-1.0
4,183,983	-				+0.4
4,184,045	-				+1.1
4,184,050	+				-0.8
4,184,051	-				-1.6
4,184,068	-				-0.4
4,184,068	-				+0.7
4,184,124	+				-0.2
4,184,125	-				+0.5
4,184,125	-				-0.3
4,184,151	+				-0.6
4,184,151	+				+0.8
4,184,214	+				-0.1
4,184,215	-				+1.7
4,184,397	+		PS417_19290	0.18	-0.2