Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18630 and PS417_18635 are separated by 55 nucleotides PS417_18635 and PS417_18640 are separated by 39 nucleotides PS417_18640 and PS417_18645 are separated by 15 nucleotides
PS417_18630: PS417_18630 - tRNA-dihydrouridine synthase C, at 4,050,136 to 4,051,113
_18630
PS417_18635: PS417_18635 - 4-hydroxybenzoyl-CoA thioesterase, at 4,051,169 to 4,051,603
_18635
PS417_18640: PS417_18640 - hydrolase, at 4,051,643 to 4,052,476
_18640
PS417_18645: PS417_18645 - TetR family transcriptional regulator, at 4,052,492 to 4,053,031
_18645
Position (kb) 4051
4052 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4050.511 kb on - strand, within PS417_18630 at 4050.621 kb on + strand, within PS417_18630 at 4050.981 kb on - strand, within PS417_18630 at 4051.302 kb on - strand, within PS417_18635 at 4051.512 kb on + strand, within PS417_18635 at 4051.512 kb on + strand, within PS417_18635 at 4051.512 kb on + strand, within PS417_18635 at 4051.513 kb on - strand, within PS417_18635 at 4051.623 kb on - strand at 4051.623 kb on - strand at 4051.642 kb on - strand at 4051.664 kb on + strand at 4051.946 kb on + strand, within PS417_18640 at 4051.947 kb on - strand, within PS417_18640 at 4051.947 kb on - strand, within PS417_18640 at 4051.947 kb on - strand, within PS417_18640 at 4052.270 kb on + strand, within PS417_18640 at 4052.271 kb on - strand, within PS417_18640 at 4052.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 4,050,511 - PS417_18630 0.38 +1.0 4,050,621 + PS417_18630 0.50 -0.2 4,050,981 - PS417_18630 0.86 -0.4 4,051,302 - PS417_18635 0.31 -0.6 4,051,512 + PS417_18635 0.79 -0.9 4,051,512 + PS417_18635 0.79 -0.9 4,051,512 + PS417_18635 0.79 -0.3 4,051,513 - PS417_18635 0.79 -2.8 4,051,623 - -0.1 4,051,623 - -0.3 4,051,642 - +2.4 4,051,664 + +0.6 4,051,946 + PS417_18640 0.36 +1.1 4,051,947 - PS417_18640 0.36 -0.7 4,051,947 - PS417_18640 0.36 +0.0 4,051,947 - PS417_18640 0.36 +0.3 4,052,270 + PS417_18640 0.75 -1.4 4,052,271 - PS417_18640 0.75 -0.5 4,052,493 + +0.7
Or see this region's nucleotide sequence