Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17460 and PS417_17465 are separated by 78 nucleotides PS417_17465 and PS417_17470 are separated by 38 nucleotides PS417_17470 and PS417_17475 overlap by 4 nucleotides
PS417_17460: PS417_17460 - Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) , at 3,814,151 to 3,815,998
_17460
PS417_17465: PS417_17465 - hypothetical protein, at 3,816,077 to 3,816,724
_17465
PS417_17470: PS417_17470 - LuxR family transcriptional regulator, at 3,816,763 to 3,817,389
_17470
PS417_17475: PS417_17475 - histidine kinase, at 3,817,386 to 3,818,648
_17475
Position (kb)
3816
3817
3818 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3815.855 kb on + strand at 3815.855 kb on + strand at 3815.856 kb on - strand at 3815.856 kb on - strand at 3816.660 kb on - strand at 3817.022 kb on + strand, within PS417_17470 at 3817.022 kb on + strand, within PS417_17470 at 3817.023 kb on - strand, within PS417_17470 at 3817.739 kb on + strand, within PS417_17475 at 3818.100 kb on - strand, within PS417_17475 at 3818.155 kb on - strand, within PS417_17475
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 3,815,855 + +3.8 3,815,855 + -0.3 3,815,856 - -2.4 3,815,856 - +1.7 3,816,660 - -2.5 3,817,022 + PS417_17470 0.41 -0.6 3,817,022 + PS417_17470 0.41 +0.1 3,817,023 - PS417_17470 0.41 -1.1 3,817,739 + PS417_17475 0.28 +0.3 3,818,100 - PS417_17475 0.57 -0.5 3,818,155 - PS417_17475 0.61 +0.3
Or see this region's nucleotide sequence