Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16335 and PS417_16340 overlap by 1 nucleotides PS417_16340 and PS417_16345 overlap by 4 nucleotides PS417_16345 and PS417_16350 are separated by 73 nucleotides
PS417_16335: PS417_16335 - tetraacyldisaccharide 4'-kinase, at 3,574,014 to 3,575,024
_16335
PS417_16340: PS417_16340 - biopolymer transporter ExbD, at 3,575,024 to 3,575,452
_16340
PS417_16345: PS417_16345 - biopolymer transporter ExbB, at 3,575,449 to 3,576,084
_16345
PS417_16350: PS417_16350 - competence protein ComEC, at 3,576,158 to 3,578,371
_16350
Position (kb)
3575
3576
3577 Strain fitness (log2 ratio)
-2
-1
0
1 at 3576.118 kb on - strand at 3576.122 kb on + strand at 3576.124 kb on + strand at 3576.124 kb on + strand at 3576.124 kb on + strand at 3576.124 kb on + strand at 3576.124 kb on + strand at 3576.124 kb on + strand at 3576.124 kb on + strand at 3576.124 kb on + strand at 3576.124 kb on + strand at 3576.125 kb on - strand at 3576.125 kb on - strand at 3576.125 kb on - strand at 3576.125 kb on - strand at 3576.132 kb on + strand at 3576.164 kb on + strand at 3576.262 kb on - strand at 3576.262 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 3,576,118 - +0.1 3,576,122 + +1.2 3,576,124 + +1.0 3,576,124 + -0.2 3,576,124 + +0.2 3,576,124 + +0.7 3,576,124 + +0.6 3,576,124 + -0.1 3,576,124 + +0.5 3,576,124 + -0.9 3,576,124 + -1.4 3,576,125 - +1.0 3,576,125 - +0.5 3,576,125 - +0.2 3,576,125 - +1.3 3,576,132 + +0.5 3,576,164 + +0.1 3,576,262 - -2.5 3,576,262 - +0.8
Or see this region's nucleotide sequence