Strain Fitness in Pseudomonas simiae WCS417 around PS417_15545

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
3,401,026	-		PS417_15535	0.75	+1.9
3,401,059	-				-0.2
3,401,107	-		PS417_15535	0.83	+2.4
3,401,199	+				-2.9
3,401,339	+				-0.2
3,401,404	+				+0.2
3,401,662	+		PS417_15540	0.73	-0.4
3,401,686	-		PS417_15540	0.80	+0.1
3,401,757	+				+1.8
3,401,758	-				+0.3
3,401,758	-				-2.0
3,401,758	-				+0.3
3,401,823	-				+0.1
3,402,130	-		PS417_15545	0.12	-1.8
3,402,130	-		PS417_15545	0.12	+0.1
3,402,207	+		PS417_15545	0.15	-0.8
3,402,654	+		PS417_15545	0.32	-0.4
3,402,654	+		PS417_15545	0.32	-2.1
3,402,693	+		PS417_15545	0.34	-1.1
3,402,694	-		PS417_15545	0.34	-0.2
3,402,694	-		PS417_15545	0.34	-0.2
3,402,694	-		PS417_15545	0.34	+0.4
3,402,772	-		PS417_15545	0.37	+0.8
3,403,042	-		PS417_15545	0.47	+0.4
3,403,167	+		PS417_15545	0.52	+0.6
3,403,312	-		PS417_15545	0.57	+0.0
3,403,404	+		PS417_15545	0.61	-1.2
3,403,488	+		PS417_15545	0.64	+0.9
3,403,590	+		PS417_15545	0.68	+0.4
3,403,591	-		PS417_15545	0.68	-2.0
3,403,823	+		PS417_15545	0.77	-0.2
3,404,034	+		PS417_15545	0.85	-1.0
3,404,041	-		PS417_15545	0.85	-1.2
3,404,053	+		PS417_15545	0.85	-1.0
3,404,053	+		PS417_15545	0.85	-1.2
3,404,055	+		PS417_15545	0.85	-1.7
3,404,055	+		PS417_15545	0.85	-2.4
3,404,055	+		PS417_15545	0.85	-0.6
3,404,056	-		PS417_15545	0.85	-1.0
3,404,056	-		PS417_15545	0.85	-0.9
3,404,056	-		PS417_15545	0.85	-0.3
3,404,088	+		PS417_15545	0.87	-1.1
3,404,280	+				-0.1
3,404,280	+				-0.5
3,404,280	+				-0.2
3,404,280	+				+0.3
3,404,281	-				-0.2
3,404,281	-				-0.1
3,404,307	+				-0.8
3,404,307	+				-1.9
3,404,342	+				+0.8
3,404,347	-				+0.5
3,404,476	+				+0.6
3,404,476	+				-0.6
3,404,477	-				-1.5
3,404,511	+				+0.8
3,404,511	+				+3.1
3,404,530	-				+0.3
3,404,530	-				-0.4
3,404,530	-				+1.0
3,404,530	-				+1.7
3,404,530	-				-0.7
3,404,587	-				+0.9
3,404,643	+				-1.5
3,404,644	-				-2.4
3,404,724	+		PS417_15550	0.15	-1.0
3,404,724	+		PS417_15550	0.15	+0.8
3,404,725	-		PS417_15550	0.15	+0.4
3,404,754	+		PS417_15550	0.17	-0.1
3,404,754	+		PS417_15550	0.17	-1.4
3,404,754	+		PS417_15550	0.17	-0.2
3,404,755	-		PS417_15550	0.17	-0.3
3,404,755	-		PS417_15550	0.17	-0.2
3,404,775	+		PS417_15550	0.19	-0.2
3,404,841	+		PS417_15550	0.23	-0.2
3,405,088	-		PS417_15550	0.41	+0.4
3,405,151	-		PS417_15550	0.45	+0.3
3,405,162	+		PS417_15550	0.46	+0.2
3,405,183	+		PS417_15550	0.48	-0.6
3,405,187	-		PS417_15550	0.48	-0.4
3,405,189	+		PS417_15550	0.48	-0.4
3,405,190	-		PS417_15550	0.48	-0.4
3,405,243	+				-0.2
3,405,244	-		PS417_15550	0.52	-3.4