Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15275 and PS417_15280 are separated by 1 nucleotides PS417_15280 and PS417_15285 are separated by 41 nucleotides PS417_15285 and PS417_15290 are separated by 16 nucleotides PS417_15290 and PS417_15295 are separated by 41 nucleotides
PS417_15275: PS417_15275 - type VI secretion protein, at 3,351,399 to 3,352,727
_15275
PS417_15280: PS417_15280 - type VI secretion protein, at 3,352,729 to 3,353,178
_15280
PS417_15285: PS417_15285 - type VI secretion protein, at 3,353,220 to 3,354,392
_15285
PS417_15290: PS417_15290 - type VI secretion protein, at 3,354,409 to 3,354,540
_15290
PS417_15295: PS417_15295 - Fis family transcriptional regulator, at 3,354,582 to 3,356,114
_15295
Position (kb)
3353
3354
3355 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3352.246 kb on + strand, within PS417_15275 at 3352.710 kb on - strand at 3352.883 kb on + strand, within PS417_15280 at 3353.157 kb on + strand at 3353.158 kb on - strand at 3353.235 kb on + strand at 3353.350 kb on + strand, within PS417_15285 at 3354.385 kb on - strand at 3354.385 kb on - strand at 3354.473 kb on + strand, within PS417_15290 at 3354.473 kb on + strand, within PS417_15290 at 3354.474 kb on - strand, within PS417_15290 at 3354.545 kb on + strand at 3354.545 kb on + strand at 3354.546 kb on - strand at 3354.887 kb on - strand, within PS417_15295 at 3355.042 kb on + strand, within PS417_15295 at 3355.045 kb on + strand at 3355.046 kb on - strand, within PS417_15295
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 3,352,246 + PS417_15275 0.64 -0.9 3,352,710 - +1.4 3,352,883 + PS417_15280 0.34 +0.4 3,353,157 + +0.7 3,353,158 - +1.0 3,353,235 + -0.8 3,353,350 + PS417_15285 0.11 -1.2 3,354,385 - -0.0 3,354,385 - +0.1 3,354,473 + PS417_15290 0.48 +0.5 3,354,473 + PS417_15290 0.48 -0.4 3,354,474 - PS417_15290 0.49 +0.4 3,354,545 + +0.8 3,354,545 + -1.1 3,354,546 - +3.5 3,354,887 - PS417_15295 0.20 -0.2 3,355,042 + PS417_15295 0.30 +0.4 3,355,045 + +0.8 3,355,046 - PS417_15295 0.30 -0.4
Or see this region's nucleotide sequence