Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01185 and PS417_01190 are separated by 13 nucleotides PS417_01190 and PS417_01195 are separated by 115 nucleotides PS417_01195 and PS417_01200 are separated by 39 nucleotides PS417_01200 and PS417_01205 are separated by 104 nucleotides
PS417_01185: PS417_01185 - ribosomal protein S6 modification protein, at 261,608 to 262,090
_01185
PS417_01190: PS417_01190 - diguanylate phosphodiesterase, at 262,104 to 262,883
_01190
PS417_01195: PS417_01195 - RNA-binding protein S4, at 262,999 to 263,406
_01195
PS417_01200: PS417_01200 - phosphoesterase, at 263,446 to 264,246
_01200
PS417_01205: PS417_01205 - molecular chaperone Hsp33, at 264,351 to 265,253
_01205
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 262.388 kb on - strand, within PS417_01190 at 262.465 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.470 kb on - strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.524 kb on - strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.576 kb on - strand, within PS417_01190 at 262.649 kb on + strand, within PS417_01190 at 262.701 kb on + strand, within PS417_01190 at 262.888 kb on + strand at 262.889 kb on - strand at 262.909 kb on + strand at 262.909 kb on + strand at 262.909 kb on + strand at 262.910 kb on - strand at 262.923 kb on + strand at 262.923 kb on + strand at 262.924 kb on - strand at 263.065 kb on + strand, within PS417_01195 at 263.066 kb on - strand at 263.257 kb on + strand, within PS417_01195 at 263.257 kb on + strand, within PS417_01195 at 263.539 kb on + strand, within PS417_01200 at 263.561 kb on + strand, within PS417_01200 at 263.561 kb on + strand, within PS417_01200 at 263.562 kb on - strand, within PS417_01200 at 263.562 kb on - strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.859 kb on + strand, within PS417_01200 at 263.877 kb on + strand, within PS417_01200 at 263.878 kb on - strand, within PS417_01200 at 263.937 kb on + strand, within PS417_01200 at 263.944 kb on + strand, within PS417_01200 at 263.945 kb on - strand, within PS417_01200 at 264.058 kb on + strand, within PS417_01200 at 264.184 kb on + strand at 264.184 kb on + strand at 264.246 kb on + strand at 264.247 kb on - strand at 264.316 kb on + strand at 264.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 262,388 - PS417_01190 0.36 +0.5 262,465 + PS417_01190 0.46 +0.4 262,469 + PS417_01190 0.47 -0.7 262,469 + PS417_01190 0.47 -0.6 262,469 + PS417_01190 0.47 -1.0 262,469 + PS417_01190 0.47 -0.5 262,469 + PS417_01190 0.47 -0.8 262,469 + PS417_01190 0.47 -1.1 262,469 + PS417_01190 0.47 -1.1 262,469 + PS417_01190 0.47 -2.9 262,469 + PS417_01190 0.47 -0.5 262,470 - PS417_01190 0.47 +1.0 262,473 + PS417_01190 0.47 -1.3 262,473 + PS417_01190 0.47 -0.4 262,474 - PS417_01190 0.47 -2.4 262,474 - PS417_01190 0.47 +1.1 262,474 - PS417_01190 0.47 +1.2 262,474 - PS417_01190 0.47 +0.9 262,523 + PS417_01190 0.54 -1.7 262,523 + PS417_01190 0.54 -1.7 262,523 + PS417_01190 0.54 -1.1 262,523 + PS417_01190 0.54 +0.0 262,523 + PS417_01190 0.54 +0.4 262,524 - PS417_01190 0.54 -1.4 262,575 + PS417_01190 0.60 -1.1 262,575 + PS417_01190 0.60 -0.6 262,576 - PS417_01190 0.61 +1.1 262,649 + PS417_01190 0.70 -1.0 262,701 + PS417_01190 0.77 +0.5 262,888 + -1.1 262,889 - +0.5 262,909 + -0.7 262,909 + +0.4 262,909 + -0.2 262,910 - +1.3 262,923 + -2.2 262,923 + -0.5 262,924 - +0.6 263,065 + PS417_01195 0.16 +0.0 263,066 - +0.6 263,257 + PS417_01195 0.63 +0.3 263,257 + PS417_01195 0.63 +1.0 263,539 + PS417_01200 0.12 -0.9 263,561 + PS417_01200 0.14 +0.0 263,561 + PS417_01200 0.14 -1.4 263,562 - PS417_01200 0.14 +0.7 263,562 - PS417_01200 0.14 +1.5 263,609 + PS417_01200 0.20 +0.6 263,609 + PS417_01200 0.20 -1.2 263,609 + PS417_01200 0.20 -1.5 263,859 + PS417_01200 0.52 -0.4 263,877 + PS417_01200 0.54 +2.2 263,878 - PS417_01200 0.54 +6.5 263,937 + PS417_01200 0.61 +0.9 263,944 + PS417_01200 0.62 +1.2 263,945 - PS417_01200 0.62 +0.1 264,058 + PS417_01200 0.76 +1.8 264,184 + +0.8 264,184 + -0.3 264,246 + +0.1 264,247 - +0.6 264,316 + -1.0 264,316 + -3.6
Or see this region's nucleotide sequence