Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01175 and PS417_01180 are separated by 140 nucleotides PS417_01180 and PS417_01185 overlap by 4 nucleotides PS417_01185 and PS417_01190 are separated by 13 nucleotides
PS417_01175: PS417_01175 - ATPase, at 259,252 to 260,565
_01175
PS417_01180: PS417_01180 - ribosomal protein S6 modification protein, at 260,706 to 261,611
_01180
PS417_01185: PS417_01185 - ribosomal protein S6 modification protein, at 261,608 to 262,090
_01185
PS417_01190: PS417_01190 - diguanylate phosphodiesterase, at 262,104 to 262,883
_01190
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 260.564 kb on - strand at 260.564 kb on - strand at 260.582 kb on + strand at 260.615 kb on + strand at 260.615 kb on + strand at 260.615 kb on + strand at 260.616 kb on - strand at 260.732 kb on + strand at 260.733 kb on - strand at 261.076 kb on + strand, within PS417_01180 at 261.301 kb on - strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.398 kb on - strand, within PS417_01180 at 261.406 kb on - strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.500 kb on - strand, within PS417_01180 at 261.574 kb on + strand at 261.574 kb on + strand at 261.574 kb on + strand at 261.666 kb on + strand, within PS417_01185 at 261.666 kb on + strand, within PS417_01185 at 261.666 kb on + strand, within PS417_01185 at 261.666 kb on + strand, within PS417_01185 at 261.813 kb on + strand, within PS417_01185 at 261.813 kb on + strand, within PS417_01185 at 261.813 kb on + strand, within PS417_01185 at 261.814 kb on - strand, within PS417_01185 at 261.814 kb on - strand, within PS417_01185 at 262.388 kb on - strand, within PS417_01190 at 262.465 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.470 kb on - strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.524 kb on - strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.576 kb on - strand, within PS417_01190
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 260,564 - +0.3 260,564 - +0.1 260,582 + +0.6 260,615 + -0.9 260,615 + -0.6 260,615 + -0.3 260,616 - -0.4 260,732 + -0.9 260,733 - +0.3 261,076 + PS417_01180 0.41 -0.3 261,301 - PS417_01180 0.66 +1.6 261,397 + PS417_01180 0.76 -0.4 261,397 + PS417_01180 0.76 -2.4 261,397 + PS417_01180 0.76 +0.4 261,398 - PS417_01180 0.76 -1.7 261,406 - PS417_01180 0.77 -2.4 261,499 + PS417_01180 0.88 -0.3 261,499 + PS417_01180 0.88 -1.3 261,499 + PS417_01180 0.88 -1.9 261,499 + PS417_01180 0.88 -1.1 261,499 + PS417_01180 0.88 -1.0 261,500 - PS417_01180 0.88 +0.5 261,574 + -0.9 261,574 + -1.9 261,574 + -2.1 261,666 + PS417_01185 0.12 -2.6 261,666 + PS417_01185 0.12 +0.0 261,666 + PS417_01185 0.12 -1.1 261,666 + PS417_01185 0.12 -1.1 261,813 + PS417_01185 0.42 -1.2 261,813 + PS417_01185 0.42 -1.2 261,813 + PS417_01185 0.42 -1.0 261,814 - PS417_01185 0.43 +0.2 261,814 - PS417_01185 0.43 -0.7 262,388 - PS417_01190 0.36 +0.5 262,465 + PS417_01190 0.46 +0.4 262,469 + PS417_01190 0.47 -0.7 262,469 + PS417_01190 0.47 -0.6 262,469 + PS417_01190 0.47 -1.0 262,469 + PS417_01190 0.47 -0.5 262,469 + PS417_01190 0.47 -0.8 262,469 + PS417_01190 0.47 -1.1 262,469 + PS417_01190 0.47 -1.1 262,469 + PS417_01190 0.47 -2.9 262,469 + PS417_01190 0.47 -0.5 262,470 - PS417_01190 0.47 +1.0 262,473 + PS417_01190 0.47 -1.3 262,473 + PS417_01190 0.47 -0.4 262,474 - PS417_01190 0.47 -2.4 262,474 - PS417_01190 0.47 +1.1 262,474 - PS417_01190 0.47 +1.2 262,474 - PS417_01190 0.47 +0.9 262,523 + PS417_01190 0.54 -1.7 262,523 + PS417_01190 0.54 -1.7 262,523 + PS417_01190 0.54 -1.1 262,523 + PS417_01190 0.54 +0.0 262,523 + PS417_01190 0.54 +0.4 262,524 - PS417_01190 0.54 -1.4 262,575 + PS417_01190 0.60 -1.1 262,575 + PS417_01190 0.60 -0.6 262,576 - PS417_01190 0.61 +1.1
Or see this region's nucleotide sequence