Strain Fitness in Pseudomonas simiae WCS417 around PS417_01170

Experiment: Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01165 and PS417_01170 are separated by 357 nucleotidesPS417_01170 and PS417_01175 are separated by 117 nucleotides PS417_01165: PS417_01165 - transcription accessory protein, at 255,712 to 258,036 _01165 PS417_01170: PS417_01170 - chemotaxis protein CheY, at 258,394 to 259,134 _01170 PS417_01175: PS417_01175 - ATPase, at 259,252 to 260,565 _01175 Position (kb) 258 259 260Strain fitness (log2 ratio) -2 -1 0 1at 257.495 kb on + strand, within PS417_01165at 257.495 kb on + strand, within PS417_01165at 257.500 kb on - strand, within PS417_01165at 257.552 kb on + strand, within PS417_01165at 257.552 kb on + strand, within PS417_01165at 257.552 kb on + strand, within PS417_01165at 257.553 kb on - strand, within PS417_01165at 257.553 kb on - strand, within PS417_01165at 257.724 kb on - strand, within PS417_01165at 257.724 kb on - strand, within PS417_01165at 257.919 kb on + strandat 257.920 kb on - strandat 258.144 kb on + strandat 258.145 kb on - strandat 258.244 kb on + strandat 258.247 kb on - strandat 258.345 kb on + strandat 258.345 kb on + strandat 258.379 kb on + strandat 259.236 kb on + strandat 259.237 kb on - strandat 259.237 kb on - strandat 259.237 kb on - strandat 259.240 kb on + strandat 259.240 kb on + strandat 259.240 kb on + strandat 259.240 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml
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257,495 + PS417_01165 0.77 -1.7
257,495 + PS417_01165 0.77 -0.6
257,500 - PS417_01165 0.77 -1.6
257,552 + PS417_01165 0.79 -1.5
257,552 + PS417_01165 0.79 -0.5
257,552 + PS417_01165 0.79 -1.5
257,553 - PS417_01165 0.79 -0.4
257,553 - PS417_01165 0.79 -0.4
257,724 - PS417_01165 0.87 +1.1
257,724 - PS417_01165 0.87 -1.0
257,919 + -2.0
257,920 - -1.2
258,144 + +0.5
258,145 - -1.5
258,244 + -0.2
258,247 - +0.0
258,345 + +0.6
258,345 + -2.0
258,379 + -0.2
259,236 + -1.5
259,237 - -2.1
259,237 - +0.2
259,237 - -1.7
259,240 + +1.3
259,240 + +0.2
259,240 + +0.8
259,240 + -2.1

Or see this region's nucleotide sequence