Strain Fitness in Pseudomonas simiae WCS417 around PS417_10630

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
2,267,166	-		PS417_10625	0.16	+1.0
2,267,180	+		PS417_10625	0.18	-0.2
2,267,181	-		PS417_10625	0.18	+0.5
2,267,199	+		PS417_10625	0.19	-0.8
2,267,200	-		PS417_10625	0.19	+0.6
2,267,200	-		PS417_10625	0.19	-0.7
2,267,334	+		PS417_10625	0.31	+1.6
2,267,334	+		PS417_10625	0.31	-2.3
2,267,335	-		PS417_10625	0.31	-0.6
2,267,335	-		PS417_10625	0.31	+0.7
2,267,442	+		PS417_10625	0.40	+1.3
2,267,443	-				-0.6
2,267,443	-		PS417_10625	0.40	-0.4
2,267,480	+		PS417_10625	0.43	+0.9
2,267,481	-		PS417_10625	0.43	-0.6
2,267,485	-		PS417_10625	0.44	-0.0
2,267,522	+		PS417_10625	0.47	+0.6
2,267,522	+		PS417_10625	0.47	+0.2
2,267,522	+		PS417_10625	0.47	+0.5
2,267,523	-		PS417_10625	0.47	+1.0
2,267,649	-		PS417_10625	0.58	-0.1
2,267,932	+		PS417_10625	0.82	-1.8
2,267,932	+		PS417_10625	0.82	+0.0
2,267,934	+		PS417_10625	0.82	+0.3
2,267,934	+		PS417_10625	0.82	+1.5
2,267,935	-		PS417_10625	0.82	-1.6
2,267,935	-		PS417_10625	0.82	+0.3
2,267,935	-		PS417_10625	0.82	-2.3
2,267,935	-		PS417_10625	0.82	+0.3
2,267,943	-		PS417_10625	0.83	+0.5
2,267,943	-		PS417_10625	0.83	-0.0
2,268,062	+				-0.0
2,268,101	+				-0.0
2,268,145	+				-0.2
2,268,145	+				-0.1
2,268,146	-				+1.0
2,268,148	-				-1.3
2,268,148	-				-0.0
2,268,206	+				-0.8
2,268,427	-		PS417_10630	0.30	+0.8
2,268,456	-		PS417_10630	0.33	-0.1
2,268,528	+		PS417_10630	0.41	-0.5
2,268,529	-		PS417_10630	0.42	-0.4
2,268,532	-		PS417_10630	0.42	+1.1
2,268,555	+		PS417_10630	0.44	+1.0
2,268,676	+		PS417_10630	0.58	-0.5
2,268,676	+		PS417_10630	0.58	+0.3
2,268,676	+		PS417_10630	0.58	+1.0
2,268,676	+		PS417_10630	0.58	-0.5
2,268,676	+		PS417_10630	0.58	+0.4
2,268,677	-		PS417_10630	0.58	+0.5
2,268,677	-		PS417_10630	0.58	-0.3
2,268,677	-		PS417_10630	0.58	+0.6
2,268,719	-		PS417_10630	0.63	+0.7
2,268,719	-		PS417_10630	0.63	+0.8
2,268,754	+		PS417_10630	0.67	+0.9
2,268,779	+		PS417_10630	0.70	-0.3
2,268,780	-		PS417_10630	0.70	-1.0
2,268,806	-		PS417_10630	0.73	-1.4
2,268,882	-		PS417_10630	0.81	+0.5
2,269,061	+				-0.0
2,269,061	+				-0.6
2,269,061	+				-1.2
2,269,061	+				-0.9
2,269,061	+				-0.8
2,269,062	-				-0.7
2,269,062	-				-0.6
2,269,067	+				-1.2
2,269,070	-				-0.6
2,269,094	+				-0.3
2,269,096	+				+0.8
2,269,096	+				+0.8
2,269,116	-				+0.0
2,269,116	-				-0.8
2,269,147	+				-1.3
2,269,148	-				+1.0
2,269,161	+				-1.7
2,269,161	+				+1.0
2,269,176	+				-0.6
2,269,177	-				-3.2
2,269,228	+				+0.7
2,269,231	+				+0.4
2,269,231	+				+2.8
2,269,231	+				+0.1
2,269,232	-				+0.2
2,269,317	+				-1.7
2,269,317	+				+1.0
2,269,529	+		PS417_10635	0.24	-1.4
2,269,530	-		PS417_10635	0.25	-0.1
2,269,665	+		PS417_10635	0.64	-1.0
2,269,665	+		PS417_10635	0.64	+0.3
2,269,666	-		PS417_10635	0.64	+0.2
2,269,666	-		PS417_10635	0.64	+0.3
2,269,669	+		PS417_10635	0.65	+0.3
2,269,669	+		PS417_10635	0.65	+1.8
2,269,669	+		PS417_10635	0.65	-1.3
2,269,670	-		PS417_10635	0.65	-0.3
2,269,916	+				+1.0
2,269,917	-		PS417_10640	0.19	-1.8
2,270,012	+		PS417_10640	0.35	+0.8
2,270,012	+		PS417_10640	0.35	+0.1
2,270,013	-		PS417_10640	0.35	-0.7