Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09295 and PS417_09300 are separated by 258 nucleotides PS417_09300 and PS417_09305 are separated by 319 nucleotides PS417_09305 and PS417_09310 are separated by 94 nucleotides
PS417_09295: PS417_09295 - hypothetical protein, at 2,016,512 to 2,018,320
_09295
PS417_09300: PS417_09300 - peptidylprolyl isomerase, at 2,018,579 to 2,019,310
_09300
PS417_09305: PS417_09305 - hypothetical protein, at 2,019,630 to 2,020,088
_09305
PS417_09310: PS417_09310 - Cro/Cl family transcriptional regulator, at 2,020,183 to 2,020,524
_09310
Position (kb)
2018
2019
2020 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2017.725 kb on + strand, within PS417_09295 at 2017.729 kb on + strand, within PS417_09295 at 2017.729 kb on + strand, within PS417_09295 at 2017.776 kb on + strand, within PS417_09295 at 2017.777 kb on - strand, within PS417_09295 at 2017.777 kb on - strand, within PS417_09295 at 2017.777 kb on - strand, within PS417_09295 at 2017.777 kb on - strand, within PS417_09295 at 2017.779 kb on + strand, within PS417_09295 at 2017.779 kb on + strand, within PS417_09295 at 2017.779 kb on + strand, within PS417_09295 at 2017.780 kb on - strand, within PS417_09295 at 2017.900 kb on - strand, within PS417_09295 at 2017.900 kb on - strand, within PS417_09295 at 2018.059 kb on - strand, within PS417_09295 at 2018.160 kb on + strand at 2018.197 kb on - strand at 2018.221 kb on - strand at 2018.221 kb on - strand at 2018.247 kb on + strand at 2018.248 kb on - strand at 2018.248 kb on - strand at 2018.282 kb on + strand at 2018.283 kb on - strand at 2018.285 kb on + strand at 2018.286 kb on - strand at 2018.286 kb on - strand at 2018.364 kb on - strand at 2018.407 kb on - strand at 2018.460 kb on + strand at 2018.960 kb on + strand, within PS417_09300 at 2019.164 kb on + strand, within PS417_09300 at 2019.164 kb on + strand, within PS417_09300 at 2019.165 kb on - strand, within PS417_09300 at 2019.271 kb on + strand at 2019.309 kb on - strand at 2019.325 kb on + strand at 2019.325 kb on + strand at 2019.326 kb on - strand at 2019.326 kb on - strand at 2019.326 kb on - strand at 2019.326 kb on - strand at 2019.326 kb on - strand at 2019.375 kb on + strand at 2019.376 kb on - strand at 2019.420 kb on - strand at 2019.420 kb on - strand at 2019.431 kb on - strand at 2019.431 kb on - strand at 2019.431 kb on - strand at 2019.431 kb on - strand at 2019.433 kb on - strand at 2019.433 kb on - strand at 2019.433 kb on - strand at 2019.532 kb on + strand at 2019.801 kb on + strand, within PS417_09305 at 2019.802 kb on - strand, within PS417_09305 at 2019.867 kb on + strand, within PS417_09305 at 2019.868 kb on - strand, within PS417_09305 at 2020.094 kb on + strand at 2020.094 kb on + strand at 2020.094 kb on + strand at 2020.094 kb on + strand at 2020.095 kb on - strand at 2020.096 kb on + strand at 2020.149 kb on + strand at 2020.156 kb on + strand at 2020.156 kb on + strand at 2020.157 kb on - strand at 2020.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 2,017,725 + PS417_09295 0.67 +0.7 2,017,729 + PS417_09295 0.67 +0.1 2,017,729 + PS417_09295 0.67 -0.1 2,017,776 + PS417_09295 0.70 +0.8 2,017,777 - PS417_09295 0.70 -0.3 2,017,777 - PS417_09295 0.70 +0.6 2,017,777 - PS417_09295 0.70 -0.3 2,017,777 - PS417_09295 0.70 -0.3 2,017,779 + PS417_09295 0.70 +0.9 2,017,779 + PS417_09295 0.70 -0.1 2,017,779 + PS417_09295 0.70 -0.4 2,017,780 - PS417_09295 0.70 -0.3 2,017,900 - PS417_09295 0.77 -0.6 2,017,900 - PS417_09295 0.77 +0.7 2,018,059 - PS417_09295 0.86 +1.3 2,018,160 + -0.3 2,018,197 - -0.7 2,018,221 - -0.6 2,018,221 - -0.9 2,018,247 + -0.2 2,018,248 - -0.6 2,018,248 - +0.4 2,018,282 + -0.4 2,018,283 - -1.0 2,018,285 + +0.6 2,018,286 - +0.0 2,018,286 - +0.1 2,018,364 - -0.4 2,018,407 - +1.4 2,018,460 + -0.4 2,018,960 + PS417_09300 0.52 +0.2 2,019,164 + PS417_09300 0.80 -0.8 2,019,164 + PS417_09300 0.80 -2.3 2,019,165 - PS417_09300 0.80 -1.2 2,019,271 + +0.5 2,019,309 - +0.9 2,019,325 + +0.7 2,019,325 + +0.4 2,019,326 - -0.1 2,019,326 - -0.4 2,019,326 - +1.5 2,019,326 - -0.4 2,019,326 - -0.1 2,019,375 + -0.3 2,019,376 - +1.5 2,019,420 - -1.3 2,019,420 - +0.3 2,019,431 - +0.3 2,019,431 - -0.6 2,019,431 - -0.4 2,019,431 - -0.4 2,019,433 - +0.2 2,019,433 - +0.2 2,019,433 - -1.2 2,019,532 + -0.0 2,019,801 + PS417_09305 0.37 -0.7 2,019,802 - PS417_09305 0.37 +1.3 2,019,867 + PS417_09305 0.52 +0.3 2,019,868 - PS417_09305 0.52 +1.2 2,020,094 + +0.3 2,020,094 + -1.4 2,020,094 + -0.6 2,020,094 + -1.5 2,020,095 - +2.1 2,020,096 + -0.5 2,020,149 + +0.0 2,020,156 + -0.3 2,020,156 + -0.2 2,020,157 - -1.3 2,020,166 + -0.7
Or see this region's nucleotide sequence