Strain Fitness in Pseudomonas simiae WCS417 around PS417_08775

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
1,908,001	-				+1.9
1,908,158	+				-0.6
1,908,158	+				+0.8
1,908,158	+				+0.5
1,908,158	+				-1.3
1,908,159	-				+1.0
1,908,159	-				-1.8
1,908,159	-				-0.3
1,908,159	-				-0.1
1,908,439	-		PS417_08770	0.39	-1.0
1,908,439	-		PS417_08770	0.39	+0.2
1,908,628	-		PS417_08770	0.70	+1.7
1,908,774	-				-1.3
1,908,810	+				-0.2
1,908,889	+				+0.7
1,908,889	+				-1.7
1,908,889	+				-1.0
1,908,944	-				+0.9
1,908,955	+				+1.0
1,909,066	+		PS417_08775	0.12	+0.0
1,909,102	+		PS417_08775	0.16	-0.3
1,909,102	+		PS417_08775	0.16	-0.8
1,909,102	+		PS417_08775	0.16	+0.3
1,909,103	-		PS417_08775	0.16	+0.0
1,909,103	-		PS417_08775	0.16	-1.2
1,909,393	-		PS417_08775	0.45	-0.7
1,909,447	+		PS417_08775	0.50	+0.3
1,909,465	+		PS417_08775	0.52	+0.5
1,909,466	-		PS417_08775	0.52	-0.7
1,909,466	-		PS417_08775	0.52	+0.3
1,909,466	-		PS417_08775	0.52	-0.1
1,909,466	-		PS417_08775	0.52	-0.6
1,910,008	+				-0.8
1,910,008	+				-0.3
1,910,009	-				-1.0
1,910,009	-				+0.1
1,910,022	+				-0.8
1,910,318	-		PS417_08780	0.32	-2.1
1,910,318	-		PS417_08780	0.32	-2.1
1,910,368	+		PS417_08780	0.38	-1.3
1,910,369	-		PS417_08780	0.38	+0.3
1,910,369	-		PS417_08780	0.38	+0.2
1,910,369	-		PS417_08780	0.38	+1.2
1,910,461	+		PS417_08780	0.50	-1.8
1,910,480	-		PS417_08780	0.52	-0.6
1,910,480	-		PS417_08780	0.52	+0.5
1,910,542	+		PS417_08780	0.59	+0.5
1,910,557	+		PS417_08780	0.61	-1.3
1,910,557	+		PS417_08780	0.61	-0.7
1,910,558	-		PS417_08780	0.61	+0.6
1,910,624	-		PS417_08780	0.69	-0.0
1,910,648	-		PS417_08780	0.72	-0.7
1,910,701	+		PS417_08780	0.79	-1.0
1,910,702	-		PS417_08780	0.79	+1.8
1,910,702	-		PS417_08780	0.79	-0.1
1,910,719	+		PS417_08780	0.81	-0.5
1,910,731	-		PS417_08780	0.82	-1.6
1,910,731	-		PS417_08780	0.82	+0.1
1,910,842	+				-1.3
1,910,842	+				+1.3
1,910,843	-				-0.2
1,910,876	+				+0.4
1,910,910	-				+0.1