Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00805 and PS417_00810 are separated by 152 nucleotides PS417_00810 and PS417_00815 overlap by 4 nucleotides PS417_00815 and PS417_00820 are separated by 291 nucleotides
PS417_00805: PS417_00805 - hypothetical protein, at 178,006 to 179,646
_00805
PS417_00810: PS417_00810 - RNA polymerase sigma factor, at 179,799 to 180,371
_00810
PS417_00815: PS417_00815 - hypothetical protein, at 180,368 to 180,961
_00815
PS417_00820: PS417_00820 - hypothetical protein, at 181,253 to 181,504
_00820
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 178.953 kb on + strand, within PS417_00805 at 178.954 kb on - strand, within PS417_00805 at 178.996 kb on - strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 179.000 kb on - strand, within PS417_00805 at 179.000 kb on - strand, within PS417_00805 at 179.047 kb on + strand, within PS417_00805 at 179.048 kb on - strand, within PS417_00805 at 179.048 kb on - strand, within PS417_00805 at 179.053 kb on + strand, within PS417_00805 at 179.053 kb on + strand, within PS417_00805 at 179.054 kb on - strand, within PS417_00805 at 179.387 kb on - strand, within PS417_00805 at 179.529 kb on + strand at 179.609 kb on + strand at 179.796 kb on + strand at 179.796 kb on + strand at 179.796 kb on + strand at 179.797 kb on - strand at 179.797 kb on - strand at 179.797 kb on - strand at 179.883 kb on + strand, within PS417_00810 at 179.883 kb on + strand, within PS417_00810 at 180.105 kb on + strand, within PS417_00810 at 180.105 kb on + strand, within PS417_00810 at 181.012 kb on + strand at 181.013 kb on - strand at 181.013 kb on - strand at 181.097 kb on + strand at 181.097 kb on + strand at 181.097 kb on + strand at 181.098 kb on - strand at 181.110 kb on - strand at 181.255 kb on - strand at 181.255 kb on - strand at 181.278 kb on - strand at 181.294 kb on - strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.307 kb on + strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand, within PS417_00820 at 181.308 kb on - strand at 181.308 kb on - strand, within PS417_00820 at 181.350 kb on - strand, within PS417_00820 at 181.361 kb on + strand, within PS417_00820
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 178,953 + PS417_00805 0.58 +0.4 178,954 - PS417_00805 0.58 -0.1 178,996 - PS417_00805 0.60 -0.2 178,999 + PS417_00805 0.61 -1.2 178,999 + PS417_00805 0.61 -0.9 178,999 + PS417_00805 0.61 -0.4 179,000 - PS417_00805 0.61 -0.2 179,000 - PS417_00805 0.61 +0.1 179,047 + PS417_00805 0.63 +0.0 179,048 - PS417_00805 0.63 +0.3 179,048 - PS417_00805 0.63 -1.2 179,053 + PS417_00805 0.64 -1.3 179,053 + PS417_00805 0.64 +0.2 179,054 - PS417_00805 0.64 -1.7 179,387 - PS417_00805 0.84 +1.0 179,529 + -1.7 179,609 + +0.7 179,796 + -2.8 179,796 + -0.5 179,796 + -0.4 179,797 - +0.3 179,797 - +1.5 179,797 - +1.1 179,883 + PS417_00810 0.15 -1.4 179,883 + PS417_00810 0.15 -1.4 180,105 + PS417_00810 0.53 -0.4 180,105 + PS417_00810 0.53 -1.6 181,012 + -0.8 181,013 - +0.6 181,013 - -0.5 181,097 + +0.4 181,097 + -0.4 181,097 + +0.5 181,098 - -0.3 181,110 - -0.1 181,255 - +0.1 181,255 - -0.8 181,278 - +0.1 181,294 - PS417_00820 0.16 -0.7 181,307 + PS417_00820 0.21 -1.3 181,307 + PS417_00820 0.21 -0.1 181,307 + PS417_00820 0.21 -2.4 181,308 - PS417_00820 0.22 -0.5 181,308 - PS417_00820 0.22 +1.6 181,308 - PS417_00820 0.22 +0.1 181,308 - +0.6 181,308 - PS417_00820 0.22 +0.8 181,350 - PS417_00820 0.38 +6.1 181,361 + PS417_00820 0.43 -1.4
Or see this region's nucleotide sequence