Strain Fitness in Pseudomonas simiae WCS417 around PS417_08165

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
1,786,664	+		PS417_08155	0.25	+1.1
1,786,673	+		PS417_08155	0.28	+3.4
1,786,674	-		PS417_08155	0.28	+4.5
1,786,906	+				+2.3
1,786,938	+		PS417_08160	0.13	+1.8
1,786,939	-		PS417_08160	0.14	+2.0
1,786,939	-		PS417_08160	0.14	+2.7
1,787,055	+		PS417_08160	0.64	+1.6
1,787,142	+				+1.1
1,787,142	+				+0.8
1,787,143	-				+3.9
1,787,143	-				+4.3
1,787,143	-				+2.7
1,787,163	-				+2.8
1,787,167	+				+0.5
1,787,168	-				+4.3
1,787,191	+				+0.4
1,787,192	-				+0.1
1,787,192	-				+3.8
1,787,208	+				+0.3
1,787,208	+				+0.4
1,787,219	-				+3.9
1,787,219	-				+4.1
1,787,259	-				+4.1
1,787,263	+				+0.9
1,787,287	-				+3.4
1,787,435	-				+4.0
1,787,489	-				+4.1
1,787,489	-				+5.4
1,787,550	-				+1.7
1,787,607	+				+0.5
1,787,638	-				+4.8
1,787,638	-				+5.6
1,787,644	+				+3.6
1,787,644	+				+4.4
1,787,645	-				+4.9
1,787,645	-				+4.8
1,787,645	-				+4.7
1,787,645	-				+4.6
1,787,645	-				+3.9
1,787,645	-				+5.3
1,787,647	+				+2.5
1,787,647	+				+4.2
1,787,647	+				+3.2
1,787,647	+				+3.0
1,787,647	+				+3.3
1,787,647	+				+4.4
1,787,648	-				+4.7
1,787,648	-				+4.8
1,787,648	-				+4.5
1,787,648	-				+4.5
1,787,648	-				+3.4
1,787,648	-				+4.8
1,787,670	+				+4.2
1,787,731	+				+5.6
1,787,731	+				+4.4
1,787,816	+				+0.1
1,787,816	+		PS417_08165	0.16	+3.3
1,787,817	-		PS417_08165	0.16	+4.9
1,787,820	+		PS417_08165	0.17	+3.3
1,787,820	+		PS417_08165	0.17	+4.5
1,787,820	+		PS417_08165	0.17	+4.2
1,787,820	+		PS417_08165	0.17	+3.4
1,787,820	+		PS417_08165	0.17	+3.9
1,787,821	-		PS417_08165	0.17	+4.6
1,787,821	-		PS417_08165	0.17	+4.5
1,787,821	-		PS417_08165	0.17	+4.1
1,787,821	-		PS417_08165	0.17	+5.2
1,788,052	+		PS417_08165	0.39	+4.2
1,788,121	+		PS417_08165	0.46	+4.1
1,788,122	-		PS417_08165	0.46	+4.2
1,788,122	-		PS417_08165	0.46	+3.5
1,788,122	-		PS417_08165	0.46	+4.4
1,788,169	-		PS417_08165	0.50	+4.7
1,788,169	-		PS417_08165	0.50	+5.1
1,788,169	-		PS417_08165	0.50	+4.2
1,788,169	-		PS417_08165	0.50	+4.4
1,788,264	+		PS417_08165	0.60	+2.7
1,788,265	-		PS417_08165	0.60	+4.5
1,788,278	+		PS417_08165	0.61	+4.1
1,788,278	+		PS417_08165	0.61	+4.2
1,788,278	+		PS417_08165	0.61	+4.8
1,788,279	-		PS417_08165	0.61	+4.6
1,788,391	+		PS417_08165	0.72	+4.6
1,788,391	+		PS417_08165	0.72	+3.9
1,788,392	-		PS417_08165	0.72	+4.2
1,788,482	+				+3.6
1,788,483	-		PS417_08165	0.81	+4.9
1,788,519	-		PS417_08165	0.84	+2.9
1,788,519	-				+2.5
1,788,569	+		PS417_08165	0.89	+4.2
1,788,569	+		PS417_08165	0.89	+4.0
1,788,668	-				+4.1
1,788,694	-				+5.0
1,788,744	+				+3.8
1,788,744	+				+4.1
1,788,788	-				+5.0
1,788,956	+		PS417_08170	0.24	+4.7
1,788,986	-		PS417_08170	0.27	+4.4
1,789,035	+		PS417_08170	0.31	+3.9
1,789,036	-		PS417_08170	0.31	+4.7
1,789,036	-		PS417_08170	0.31	+3.4
1,789,109	+		PS417_08170	0.38	+4.0
1,789,398	-		PS417_08170	0.64	+4.8
1,789,398	-		PS417_08170	0.64	+6.1
1,789,407	-		PS417_08170	0.64	+4.5
1,789,427	-		PS417_08170	0.66	+5.0
1,789,427	-		PS417_08170	0.66	+3.2
1,789,427	-		PS417_08170	0.66	+2.4
1,789,430	+		PS417_08170	0.66	+3.5
1,789,445	+		PS417_08170	0.68	+2.0
1,789,446	-		PS417_08170	0.68	+4.4
1,789,614	+		PS417_08170	0.83	+2.8
1,789,614	+		PS417_08170	0.83	+3.0
1,789,614	+		PS417_08170	0.83	+3.1
1,789,614	+		PS417_08170	0.83	+3.7
1,789,614	+		PS417_08170	0.83	+4.6
1,789,614	+		PS417_08170	0.83	+3.4
1,789,615	-		PS417_08170	0.83	+5.0
1,789,615	-		PS417_08170	0.83	+3.2
1,789,615	-				+1.7
1,789,615	-		PS417_08170	0.83	+4.7
1,789,615	-		PS417_08170	0.83	+4.2
1,789,615	-		PS417_08170	0.83	+4.8
1,789,615	-		PS417_08170	0.83	+4.3
1,789,615	-		PS417_08170	0.83	+4.7
1,789,617	+		PS417_08170	0.83	+3.3
1,789,617	+		PS417_08170	0.83	+3.8
1,789,618	-		PS417_08170	0.83	+4.7
1,789,632	-		PS417_08170	0.85	+4.8
1,789,632	-		PS417_08170	0.85	+4.7