Strain Fitness in Pseudomonas simiae WCS417 around PS417_07845

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
1,721,158	+		PS417_07835	0.59	-0.6
1,721,158	+		PS417_07835	0.59	+0.5
1,721,158	+		PS417_07835	0.59	+0.2
1,721,159	-		PS417_07835	0.59	+0.1
1,721,159	-		PS417_07835	0.59	-1.0
1,721,159	-				+2.1
1,721,238	+		PS417_07835	0.78	+0.9
1,721,238	+		PS417_07835	0.78	-0.4
1,721,239	-		PS417_07835	0.78	+0.1
1,721,239	-		PS417_07835	0.78	-0.2
1,721,269	+		PS417_07835	0.86	-0.0
1,721,290	-				-2.0
1,721,302	+				+0.3
1,721,303	-				-0.4
1,721,325	+				+0.6
1,721,341	+				+1.1
1,721,348	+				+0.6
1,721,361	+				+0.0
1,721,396	+				+2.3
1,721,396	+				+0.3
1,721,401	-				-0.8
1,721,429	-				-0.0
1,721,440	-				-2.0
1,721,449	-				+0.8
1,721,464	+				+2.1
1,721,465	-				+0.1
1,721,465	-				-0.2
1,721,469	-				-1.0
1,721,481	-				+0.3
1,721,519	+				-3.0
1,721,528	+				+1.4
1,721,528	+				+1.9
1,721,529	-				-2.2
1,721,529	-				+0.2
1,721,623	+				+0.1
1,721,623	+				+0.5
1,721,624	-				+1.3
1,721,639	-				+0.7
1,721,641	-				+0.2
1,721,664	+				+0.4
1,721,664	+				-0.2
1,721,665	-				+0.2
1,721,665	-				-3.4
1,721,665	-				-0.2
1,721,684	-				-1.3
1,721,725	+				-2.7
1,721,759	+				+0.3
1,721,759	+				+0.9
1,721,872	+		PS417_07840	0.53	+0.8
1,721,873	-		PS417_07840	0.53	+0.9
1,721,879	+		PS417_07840	0.56	+0.9
1,721,879	+		PS417_07840	0.56	+0.6
1,721,879	+		PS417_07840	0.56	+2.7
1,721,880	-		PS417_07840	0.56	-1.6
1,721,880	-		PS417_07840	0.56	+0.1
1,721,955	+				+0.4
1,722,030	-				-3.0
1,722,056	+				+2.3
1,722,056	+				+2.4
1,722,069	+				+0.8
1,722,070	-				-1.2
1,722,089	+				+1.9
1,722,089	+				+1.1
1,722,089	+				+2.3
1,722,115	+				+2.1
1,722,125	-				-3.0
1,722,131	+				-1.2
1,722,171	+				+1.0
1,722,171	+				-1.3
1,722,172	-				+0.1
1,722,173	+				-0.5
1,722,174	-				+0.3
1,722,174	-				-0.9
1,722,368	+		PS417_07845	0.59	-1.0
1,722,402	+		PS417_07845	0.68	-1.5
1,722,517	-				-0.0
1,722,559	-				-0.2
1,722,559	-				-1.2
1,722,575	+				+1.1
1,722,575	+				-0.5
1,722,576	-				-2.0
1,722,583	-				-1.9
1,722,734	+		PS417_07850	0.30	-0.7
1,722,735	-		PS417_07850	0.31	-0.3
1,722,872	+		PS417_07850	0.50	-0.3
1,722,873	-				-1.5
1,722,873	-		PS417_07850	0.50	+0.9
1,722,873	-		PS417_07850	0.50	+0.3
1,722,878	+		PS417_07850	0.51	-1.1
1,723,089	+		PS417_07850	0.81	-0.6
1,723,168	+				-0.2
1,723,214	+				-0.2
1,723,214	+				-0.6
1,723,217	+				+0.3
1,723,218	-				-0.5
1,723,249	+				+0.1
1,723,258	+				-4.1
1,723,258	+				+0.8
1,723,259	-				+0.5
1,723,270	+				-0.4
1,723,276	+				+0.5
1,723,335	+		PS417_07855	0.16	+0.8
1,723,350	+		PS417_07855	0.22	-0.3
1,723,351	-		PS417_07855	0.22	-2.0
1,723,393	+		PS417_07855	0.37	+0.6